Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SMARCA1P28370 MTND4P12-201ENST00000498999 1377 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC058791.1-201ENST00000608412 3198 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SMARCA1P28370 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SMARCA1P28370 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
SMARCA1P28370 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SMARCA1P28370 MIR183-201ENST00000384958 110 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SMARCA1P28370 AP000567.1-201ENST00000406413 156 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 RAP1BP3-201ENST00000407180 549 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 RNA5SP44-201ENST00000410446 133 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 RNU6-373P-201ENST00000411247 98 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.02□□□□□ -1.77
SMARCA1P28370 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.02□□□□□ -1.77
SMARCA1P28370 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.02□□□□□ -1.77
SMARCA1P28370 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.02□□□□□ -1.77
SMARCA1P28370 AL357552.1-201ENST00000445254 415 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.02□□□□□ -1.77
SMARCA1P28370 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.02□□□□□ -1.77
SMARCA1P28370 MTND3P16-201ENST00000452205 344 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC104806.1-201ENST00000508720 308 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC098591.2-201ENST00000510152 315 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC046134.1-201ENST00000514454 666 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.02□□□□□ -1.77
SMARCA1P28370 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.02□□□□□ -1.77
SMARCA1P28370 MIR4424-201ENST00000585257 86 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AP002826.1-201ENST00000608835 315 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC019176.2-201ENST00000611579 315 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AL357559.1-201ENST00000622228 274 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 AC007998.5-201ENST00000622938 237 ntBASIC4.02□□□□□ -1.77
SMARCA1P28370 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
SMARCA1P28370 AL137003.2-201ENST00000606924 2538 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SMARCA1P28370 CBX3P1-201ENST00000325243 554 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 Y_RNA.157-201ENST00000363638 102 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 RNU6-38P-201ENST00000384085 107 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 BX323014.1-201ENST00000412876 237 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 RPL27AP8-201ENST00000424277 446 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AC002075.2-201ENST00000425207 252 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AP000907.1-201ENST00000428428 510 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AL159987.2-201ENST00000432754 307 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.01□□□□□ -1.77
SMARCA1P28370 NEFMP1-201ENST00000443423 1006 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SMARCA1P28370 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 RNU6-333P-201ENST00000459117 107 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 RNU7-180P-201ENST00000459240 63 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.01□□□□□ -1.77
SMARCA1P28370 RNU4-29P-201ENST00000515943 174 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 RN7SKP258-201ENST00000517151 304 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 IGKV2-26-201ENST00000518305 343 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.01□□□□□ -1.77
SMARCA1P28370 MIR3921-201ENST00000577308 85 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 MIR3944-201ENST00000581277 108 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AC018638.8-201ENST00000588755 281 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 AC006557.5-201ENST00000603126 811 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AL365204.3-201ENST00000612448 685 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.01□□□□□ -1.77
SMARCA1P28370 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 AC100810.6-201ENST00000638068 285 ntBASIC4.01□□□□□ -1.77
SMARCA1P28370 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.01□□□□□ -1.77
SMARCA1P28370 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SMARCA1P28370 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SMARCA1P28370 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SMARCA1P28370 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
SMARCA1P28370 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4□□□□□ -1.77
SMARCA1P28370 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4□□□□□ -1.77
SMARCA1P28370 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SMARCA1P28370 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4□□□□□ -1.77
SMARCA1P28370 AC073073.2-201ENST00000609827 2578 ntBASIC4□□□□□ -1.77
SMARCA1P28370 MIR514A2-201ENST00000385131 88 ntBASIC4□□□□□ -1.77
SMARCA1P28370 MIR514A3-201ENST00000385132 88 ntBASIC4□□□□□ -1.77
SMARCA1P28370 SNORD37.1-201ENST00000390968 65 ntBASIC4□□□□□ -1.77
SMARCA1P28370 RNU6-193P-201ENST00000410977 107 ntBASIC4□□□□□ -1.77
SMARCA1P28370 RN7SKP140-201ENST00000411196 284 ntBASIC4□□□□□ -1.77
SMARCA1P28370 BX842559.1-201ENST00000419615 532 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4□□□□□ -1.77
SMARCA1P28370 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4□□□□□ -1.77
SMARCA1P28370 CBWD4P-201ENST00000445695 655 ntBASIC4□□□□□ -1.77
SMARCA1P28370 HMGB3P8-201ENST00000449709 577 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4□□□□□ -1.77
SMARCA1P28370 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4□□□□□ -1.77
SMARCA1P28370 AP000852.1-201ENST00000472460 573 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4□□□□□ -1.77
SMARCA1P28370 AC010486.1-201ENST00000511793 424 ntBASIC4□□□□□ -1.77
SMARCA1P28370 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4□□□□□ -1.77
SMARCA1P28370 SNORA31.3-201ENST00000516029 96 ntBASIC4□□□□□ -1.77
SMARCA1P28370 RN7SKP60-201ENST00000516985 239 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AC023050.3-201ENST00000541142 333 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AC007458.1-201ENST00000542812 373 ntBASIC4□□□□□ -1.77
SMARCA1P28370 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4□□□□□ -1.77
SMARCA1P28370 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4□□□□□ -1.77
SMARCA1P28370 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4□□□□□ -1.77
SMARCA1P28370 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4□□□□□ -1.77
SMARCA1P28370 AC130324.3-201ENST00000614165 542 ntBASIC4□□□□□ -1.77
SMARCA1P28370 AL110115.1-201ENST00000614396 364 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms