Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL9A1P20849 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL9A1P20849 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL9A1P20849 RNU6-801P-201ENST00000364087 105 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 Y_RNA.287-201ENST00000364853 94 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
COL9A1P20849 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 GPM6BP3-201ENST00000442797 145 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 EIF4A1P11-201ENST00000451239 222 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 AC016632.1-201ENST00000503994 196 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.59□□□□□ -1.51
COL9A1P20849 RNA5SP291-201ENST00000517222 105 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.59□□□□□ -1.51
COL9A1P20849 MIR3121-201ENST00000579680 77 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 MIR3158-1-201ENST00000583596 81 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 AL391813.1-201ENST00000603098 260 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 MIR6716-201ENST00000613413 80 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 MIR3674-201ENST00000636576 68 ntBASIC5.59□□□□□ -1.51
COL9A1P20849 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
COL9A1P20849 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL9A1P20849 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.59□□□□□ -1.51
COL9A1P20849 AC018809.2-201ENST00000602436 3823 ntBASIC5.59□□□□□ -1.52
COL9A1P20849 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
COL9A1P20849 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.58□□□□□ -1.52
COL9A1P20849 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.58□□□□□ -1.52
COL9A1P20849 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 RN7SKP224-201ENST00000364140 325 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNU6-915P-201ENST00000364943 103 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNU6-32P-201ENST00000383948 107 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNU6-13P-201ENST00000384248 107 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNU6-12P-201ENST00000384604 107 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNU6-41P-201ENST00000384741 107 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AL512633.1-201ENST00000399931 655 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AL355497.1-201ENST00000406262 551 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RNA5SP475-201ENST00000410568 110 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 ELOCP21-201ENST00000412558 336 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 RPS26P42-201ENST00000413485 326 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AIMP1P2-201ENST00000425294 312 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 CRIP1P1-201ENST00000427567 185 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.58□□□□□ -1.52
COL9A1P20849 MTCO1P44-201ENST00000441935 243 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.58□□□□□ -1.52
COL9A1P20849 RPS27P1-201ENST00000450552 247 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 HSPE1P13-201ENST00000451143 297 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC5.58□□□□□ -1.52
COL9A1P20849 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 MIR3921-201ENST00000577308 85 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AC091042.1-201ENST00000579213 173 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 MIR3944-201ENST00000581277 108 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AC006115.2-201ENST00000596823 202 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 AL161756.2-201ENST00000604597 246 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 AC093535.2-201ENST00000624769 2326 ntBASIC5.58□□□□□ -1.52
COL9A1P20849 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL9A1P20849 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL9A1P20849 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL9A1P20849 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.57□□□□□ -1.52
COL9A1P20849 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC5.57□□□□□ -1.52
COL9A1P20849 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL9A1P20849 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL9A1P20849 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.57□□□□□ -1.52
COL9A1P20849 SNURFL-201ENST00000309296 343 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNA5SP326-201ENST00000363209 110 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 Y_RNA.251-201ENST00000364551 99 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNU6-793P-201ENST00000384233 104 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 Y_RNA.495-201ENST00000384435 112 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNU6-768P-201ENST00000384683 107 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 MIR15B-201ENST00000385045 98 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNA5SP372-201ENST00000390836 115 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 AL009179.1-201ENST00000406085 265 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RN7SKP53-201ENST00000411337 315 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 FTH1P6-201ENST00000430768 320 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 CKS1BP5-201ENST00000434172 273 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 AC010618.1-201ENST00000469924 477 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC5.57□□□□□ -1.52
COL9A1P20849 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.57□□□□□ -1.52
COL9A1P20849 SCARNA8-201ENST00000515924 131 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNU6-436P-201ENST00000516171 114 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 RNU6-1256P-201ENST00000516539 103 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.57□□□□□ -1.52
COL9A1P20849 MIR6075-201ENST00000620782 95 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 U6.99-201ENST00000637524 83 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL9A1P20849 AC010329.5-201ENST00000623497 2174 ntBASIC5.57□□□□□ -1.52
COL9A1P20849 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL9A1P20849 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL9A1P20849 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL9A1P20849 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms