Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CR848007.2-201ENST00000424918 787 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AC012497.1-201ENST00000429392 575 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AC093716.1-201ENST00000435923 377 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 RPL23AP3-201ENST00000453844 468 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 MIR4299-201ENST00000577899 72 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 MIR4529-201ENST00000578110 78 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AC079395.3-201ENST00000615161 484 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 ZNF702P-202ENST00000434269 1966 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 RNA5SP391-201ENST00000363456 119 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 MRPL35P3-201ENST00000421557 364 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 HSPE1P21-201ENST00000438283 308 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 SNORA31.8-201ENST00000516327 108 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 RNA5SP476-201ENST00000516613 103 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 SNORA31.25-201ENST00000517242 134 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 AP005639.2-201ENST00000527592 928 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.24□□□□□ -2.21
CCDC88BA6NC98 HSPE1P7-201ENST00000604681 321 ntBASIC1.24□□□□□ -2.21
CCDC88BA6NC98 RNA5SP62-201ENST00000363457 110 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 MIR320B1-201ENST00000390209 79 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 RPS15AP27-201ENST00000449183 343 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 AC027575.1-201ENST00000481064 460 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 AC105313.1-201ENST00000509121 353 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.23□□□□□ -2.21
CCDC88BA6NC98 PRR13P7-201ENST00000605538 430 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 AC096586.2-201ENST00000610260 441 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.23□□□□□ -2.21
CCDC88BA6NC98 NACAP2-201ENST00000318548 624 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AL356131.1-201ENST00000405826 414 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 RN7SKP61-201ENST00000410642 295 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 UBE2FP1-201ENST00000416536 447 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC112518.2-201ENST00000508565 425 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC092451.2-201ENST00000538746 658 ntBASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC88BA6NC98 MTND4P31-201ENST00000425607 1343 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 ZNF37BP-203ENST00000452306 1352 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 Y_RNA.433-201ENST00000384089 102 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 SNORA70.7-201ENST00000384159 133 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 U3.20-201ENST00000390909 217 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 HMGB3P31-201ENST00000413333 595 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 RPL7L1P10-201ENST00000427790 463 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 LINC00933-203ENST00000559812 219 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC88BA6NC98 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.21□□□□□ -2.22
CCDC88BA6NC98 OR9R1P-201ENST00000412200 877 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 AC244636.1-201ENST00000421152 228 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 OR6C72P-201ENST00000451403 892 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.2□□□□□ -2.22
CCDC88BA6NC98 AL355810.1-201ENST00000614629 552 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 AL109933.3-201ENST00000619095 188 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 AC090517.3-201ENST00000625170 141 ntBASIC1.2□□□□□ -2.22
CCDC88BA6NC98 RNU6-492P-201ENST00000363035 104 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 MIR934-201ENST00000401241 83 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC88BA6NC98 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.19□□□□□ -2.22
CCDC88BA6NC98 SUMO2P2-201ENST00000456482 255 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 AC117454.1-201ENST00000491120 168 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC88BA6NC98 RNA5SP121-201ENST00000516537 101 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 PCNAP1-202ENST00000595299 752 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.19□□□□□ -2.22
CCDC88BA6NC98 AC022513.1-201ENST00000624512 117 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 MIR924-201ENST00000638017 53 ntBASIC1.19□□□□□ -2.22
CCDC88BA6NC98 RNU6-716P-201ENST00000365621 103 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 RPL27AP8-201ENST00000424277 446 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 snoU109.1-201ENST00000459339 135 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC103851.1-201ENST00000506833 274 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 RRN3P3-201ENST00000549207 578 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AC005786.1-201ENST00000588553 154 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 OR4G2P-201ENST00000328113 903 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 Y_RNA.85-201ENST00000363014 111 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC88BA6NC98 RNU6-837P-201ENST00000391056 108 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 SFR1P2-201ENST00000421841 730 ntBASIC1.18□□□□□ -2.22
CCDC88BA6NC98 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms