Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 OR4G2P-202ENST00000641004 1759 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.44-201ENST00000362676 108 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RNU1-43P-201ENST00000365052 165 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RNY1P5-201ENST00000383890 115 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RNY3P4-201ENST00000384428 101 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 MIR514A1-201ENST00000385133 98 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 DUTP5-201ENST00000406790 469 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 MTCYBP2-201ENST00000407745 171 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 SNORD56-201ENST00000413522 71 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 TMSB10P2-201ENST00000416049 131 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 DDX39BP1-205ENST00000422507 192 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AL691482.1-201ENST00000453255 87 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RN7SL629P-201ENST00000489622 285 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.662-201ENST00000516028 97 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RNU6-513P-201ENST00000516104 104 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RN7SKP147-201ENST00000517154 244 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC007225.2-201ENST00000562529 256 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 FAM60BP-201ENST00000578364 658 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC097372.5-201ENST00000623665 376 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 AC087190.4-201ENST00000574616 8334 ntBASIC4.53□□□□□ -1.68
HIF3AQ9Y2N7 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 SNORA73.1-201ENST00000363107 205 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-384P-201ENST00000364900 104 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.304-201ENST00000365011 112 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 MIR124-3-201ENST00000384866 87 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AL033519.2-201ENST00000403958 392 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 RPS12P23-201ENST00000419579 400 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC079780.1-201ENST00000428259 207 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 HSPE1P25-201ENST00000455484 251 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 RN7SKP210-201ENST00000459176 261 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 RPS4XP1-201ENST00000482189 787 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC027308.1-201ENST00000517993 110 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 BNIP3P1-201ENST00000547295 580 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 EDDM3DP-201ENST00000554692 434 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC051619.2-201ENST00000559063 397 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AP001485.1-201ENST00000604799 199 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC131238.1-201ENST00000617135 328 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AC006065.5-201ENST00000623427 349 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 MAPK10-320ENST00000641462 6696 ntBASIC4.52□□□□□ -1.69
HIF3AQ9Y2N7 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AL672167.1-204ENST00000641875 3017 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC007785.2-201ENST00000598627 1916 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 DEFB108F-201ENST00000344638 222 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.383-201ENST00000383855 97 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-651P-201ENST00000411040 105 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AL592148.1-201ENST00000413568 445 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 HIGD1AP2-201ENST00000446367 280 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RPL21P104-201ENST00000464143 478 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 TOMM22P6-201ENST00000465035 409 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 AC097484.1-201ENST00000471148 389 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RN7SL799P-201ENST00000475891 298 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 RPS18P6-201ENST00000476880 458 ntBASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.51□□□□□ -1.69
HIF3AQ9Y2N7 MLLT10P2-201ENST00000506434 249 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms