Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC009901.1-201ENST00000506703 541 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 RNU1-103P-201ENST00000516502 125 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 Vault.3-201ENST00000516676 95 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC022616.3-201ENST00000523940 148 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC137800.2-201ENST00000574375 120 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 MIR4325-201ENST00000583049 90 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC015871.2-201ENST00000603605 948 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC004832.5-201ENST00000608677 401 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AL591516.1-201ENST00000611326 274 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AL158063.1-201ENST00000615349 536 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC110491.1-201ENST00000562191 2010 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS28Q9UK41 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC093010.3-201ENST00000570269 15214 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS28Q9UK41 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS28Q9UK41 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS28Q9UK41 MIR422A-201ENST00000362286 90 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 RNU6-39P-201ENST00000384344 107 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 SNORA46-201ENST00000384762 135 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 BPY2DP-201ENST00000422208 265 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC098614.2-201ENST00000426040 255 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 MED13P1-201ENST00000428342 171 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 MTND2P4-201ENST00000445034 1004 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 RPS15AP27-201ENST00000449183 343 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC009961.3-201ENST00000449832 765 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 RN7SL75P-201ENST00000461926 281 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC091965.2-201ENST00000512324 613 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 RNA5SP341-201ENST00000516261 117 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 Y_RNA.688-201ENST00000516565 95 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 Y_RNA.695-201ENST00000516715 107 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 NRBF2P1-201ENST00000587407 859 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC022893.3-201ENST00000607665 437 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 AC110994.2-201ENST00000635481 492 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS28Q9UK41 ELL2P3-201ENST00000457883 1602 ntBASIC3.19□□□□□ -1.9
VPS28Q9UK41 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS28Q9UK41 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 MIR558-201ENST00000384920 94 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 MIR128-1-201ENST00000384921 82 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 SNORA48.5-201ENST00000391143 135 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL353729.1-201ENST00000425044 720 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL358075.3-201ENST00000426289 226 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC244505.4-201ENST00000434905 287 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 RPL36AP6-201ENST00000435770 321 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC009961.2-201ENST00000435771 251 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC073614.1-201ENST00000438690 650 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC098831.1-201ENST00000440661 216 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 SSXP5-201ENST00000443473 287 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 GAPDHP17-201ENST00000449858 1001 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 MTATP6P7-201ENST00000453315 681 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 RPL27AP5-201ENST00000469428 449 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC128713.1-201ENST00000471495 306 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC126182.1-201ENST00000478134 357 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC026801.1-201ENST00000497178 464 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 RN7SKP272-201ENST00000516988 232 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC010620.2-201ENST00000600135 313 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC005000.2-201ENST00000605468 310 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC013562.2-201ENST00000611632 603 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC011939.3-201ENST00000613686 466 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC130324.3-201ENST00000614165 542 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS28Q9UK41 Z69908.1-201ENST00000622603 247 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 AL512643.1-201ENST00000635735 524 ntBASIC3.18□□□□□ -1.9
VPS28Q9UK41 Z99571.1-201ENST00000636677 394 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms