Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-885P-201ENST00000516607 104 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC090821.2-201ENST00000523552 176 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 MIR4421-201ENST00000578133 69 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC103710.4-201ENST00000609301 899 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL161423.1-201ENST00000613700 262 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 MIR7974-201ENST00000615835 79 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL445493.3-201ENST00000619568 477 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC010329.5-201ENST00000623497 2174 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RNY1P10-201ENST00000363268 113 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 SNORA25.9-201ENST00000365087 128 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 Y_RNA.338-201ENST00000365320 114 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RNU6-1035P-201ENST00000384477 107 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 MIR518E-201ENST00000385252 88 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL035405.1-201ENST00000400795 710 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RNA5SP233-201ENST00000459153 113 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 KLF3P2-201ENST00000465138 268 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 BZW1P2-201ENST00000473537 826 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 RPS27P21-201ENST00000486977 252 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC084024.2-201ENST00000503480 791 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AP004607.1-201ENST00000524456 203 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC090888.1-201ENST00000561335 1141 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC133794.1-201ENST00000602731 914 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AL671309.1-201ENST00000603750 544 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AP005137.2-201ENST00000609238 400 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 FTX_3.1-201ENST00000610451 147 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 DUXAP10-204ENST00000612052 616 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC006338.1-201ENST00000618453 749 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 AC106730.3-201ENST00000624568 641 ntBASIC1.33□□□□□ -2.2
SCN3AQ9NY46 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 SNORD56.4-201ENST00000363883 71 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 POLHP1-201ENST00000411806 470 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC023141.4-201ENST00000412031 328 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AL356379.1-201ENST00000414105 126 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AL512661.1-201ENST00000434586 1253 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 FGF7P5-201ENST00000441829 291 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 PSPHP1-201ENST00000450062 261 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 NDUFA5P7-201ENST00000452914 242 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC034222.1-201ENST00000494052 532 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 SNORA31.22-201ENST00000517204 135 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC118273.2-201ENST00000532092 465 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC093519.1-201ENST00000566109 298 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC080013.4-201ENST00000607624 649 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC007038.2-201ENST00000608095 740 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AP001033.2-201ENST00000609701 1003 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC090132.2-201ENST00000615881 347 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC009090.3-201ENST00000616553 565 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AL162373.1-201ENST00000620433 407 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 Y_RNA.191-201ENST00000363972 113 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 RNU6-932P-201ENST00000391108 106 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 RPS26P30-201ENST00000443431 335 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC055731.1-201ENST00000474387 401 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC026801.1-201ENST00000497178 464 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC007151.1-201ENST00000572774 483 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 LARP7P2-201ENST00000575306 125 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 ZNF92P2-201ENST00000600543 1059 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC002487.1-201ENST00000604565 994 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC025588.2-201ENST00000604851 466 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 snoU13.31-201ENST00000607291 104 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
SCN3AQ9NY46 ZNF209P-201ENST00000593450 2304 ntBASIC1.32□□□□□ -2.2
SCN3AQ9NY46 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 RNA5SP240-201ENST00000365355 128 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 RNU6-481P-201ENST00000384194 107 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 MTCO3P1-205ENST00000422088 832 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC005840.1-201ENST00000498412 377 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC138853.1-201ENST00000503549 823 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 MRPS17P9-201ENST00000511924 393 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 RNU1-92P-201ENST00000517017 135 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 SNORA31.23-201ENST00000517219 133 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 HSPA8P13-201ENST00000523715 472 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC087465.1-201ENST00000560574 245 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.31□□□□□ -2.2
SCN3AQ9NY46 AGGF1P5-201ENST00000567900 919 ntBASIC1.31□□□□□ -2.2
SCN3AQ9NY46 MIR4789-201ENST00000577469 82 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms