Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC004486.1-201ENST00000546846 233 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC107016.2-201ENST00000547968 190 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.6-201ENST00000603753 252 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC098826.3-201ENST00000603823 466 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.11-201ENST00000604059 253 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL161798.1-201ENST00000604630 131 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC008162.1-201ENST00000604718 254 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.1-201ENST00000604752 252 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AP000860.1-201ENST00000605250 559 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.5-201ENST00000605253 252 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.12-201ENST00000605291 253 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.8-201ENST00000605353 252 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL670379.7-201ENST00000605823 252 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AL031775.1-201ENST00000607014 887 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC103710.2-201ENST00000609912 942 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC006338.1-201ENST00000618453 749 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 MIR6852-201ENST00000621699 66 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC018692.3-201ENST00000623929 123 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC006386.2-201ENST00000624491 75 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC012005.1-201ENST00000624575 75 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 AC007494.3-201ENST00000624660 743 ntBASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.69□□□□□ -1.98
DDX28Q9NUL7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AL359693.1-201ENST00000614959 2407 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 RNU6-511P-201ENST00000363496 107 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 Y_RNA.169-201ENST00000363745 96 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 RNU6-884P-201ENST00000363889 107 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 RNU1-140P-201ENST00000365040 165 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AL356583.2-201ENST00000426536 280 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC104651.1-201ENST00000427559 735 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 COX6CP12-201ENST00000446748 202 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC098826.2-201ENST00000452011 651 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 CECR9-201ENST00000453421 199 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 S100A11P2-201ENST00000467589 312 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC114786.4-201ENST00000508771 728 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 SNORA31.15-201ENST00000516771 132 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC011979.2-201ENST00000527568 352 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AP002404.1-201ENST00000532005 451 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC112191.3-201ENST00000604371 277 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC004805.2-201ENST00000605382 482 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 AC135776.4-201ENST00000624300 1904 ntBASIC2.68□□□□□ -1.98
DDX28Q9NUL7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
DDX28Q9NUL7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 UBE2L2-201ENST00000254302 429 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 RNA5SP393-201ENST00000363423 117 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 RNU6-14P-201ENST00000384630 106 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 SNORD67-201ENST00000390833 111 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 MRPL42P2-201ENST00000403169 426 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 SEPT2P1-201ENST00000419651 180 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 ISCA1P1-201ENST00000426679 387 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AC092427.1-202ENST00000430569 476 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 NEFMP1-201ENST00000443423 1006 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 NANOGNBP1-201ENST00000448444 480 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 RN7SL432P-201ENST00000484057 298 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 FABP5P5-201ENST00000515537 406 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 RNA5SP471-201ENST00000516971 106 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
DDX28Q9NUL7 AC026407.1-201ENST00000518369 204 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 ARL2BPP2-201ENST00000550907 489 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 MIR3670-2-201ENST00000582974 65 ntBASIC2.67□□□□□ -1.98
DDX28Q9NUL7 MIR3670-1-201ENST00000584160 65 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms