Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AP006587.4-201ENST00000526053 529 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.64□□□□□ -1.99
LIME1Q9H400 HMGB1P14-201ENST00000557424 591 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 MIR4528-201ENST00000577763 90 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.6-201ENST00000603753 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.11-201ENST00000604059 253 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 HSPE1P7-201ENST00000604681 321 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AC008162.1-201ENST00000604718 254 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.1-201ENST00000604752 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.5-201ENST00000605253 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.12-201ENST00000605291 253 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.8-201ENST00000605353 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL670379.7-201ENST00000605823 252 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 AL138880.2-201ENST00000616214 239 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIME1Q9H400 AL049641.1-201ENST00000441055 1948 ntBASIC2.64□□□□□ -1.99
LIME1Q9H400 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.63□□□□□ -1.99
LIME1Q9H400 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.63□□□□□ -1.99
LIME1Q9H400 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIME1Q9H400 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIME1Q9H400 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.63□□□□□ -1.99
LIME1Q9H400 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIME1Q9H400 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
LIME1Q9H400 NDUFS5P1-201ENST00000405668 289 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 C1DP2-201ENST00000418167 426 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC012498.1-201ENST00000424037 437 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC092047.1-201ENST00000424997 240 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC137499.1-201ENST00000427602 88 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC119618.1-201ENST00000434191 222 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.63□□□□□ -1.99
LIME1Q9H400 ELOCP23-201ENST00000452014 332 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 KLF3P2-201ENST00000465138 268 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 RN7SL283P-201ENST00000489055 303 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.63□□□□□ -1.99
LIME1Q9H400 RNU2-10P-201ENST00000516375 211 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 Vault.3-201ENST00000516676 95 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 RNU6-1282P-201ENST00000516735 96 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 RNU6-1092P-201ENST00000516955 87 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.63□□□□□ -1.99
LIME1Q9H400 CYCSP39-201ENST00000565821 309 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.63□□□□□ -1.99
LIME1Q9H400 MTCO3P24-201ENST00000572729 782 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 MIR3167-201ENST00000579623 85 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.63□□□□□ -1.99
LIME1Q9H400 AP002360.4-201ENST00000606980 481 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC099842.1-201ENST00000619919 596 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AC092656.1-203ENST00000624134 423 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 OR5H6-203ENST00000642105 978 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
LIME1Q9H400 MTND5P19-201ENST00000424872 1794 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 AL359693.1-201ENST00000614959 2407 ntBASIC2.63□□□□□ -1.99
LIME1Q9H400 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LIME1Q9H400 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
LIME1Q9H400 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
LIME1Q9H400 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
LIME1Q9H400 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
LIME1Q9H400 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC008264.2-201ENST00000610193 3731 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 TPTE2P4-201ENST00000258589 1605 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RNU6-960P-201ENST00000364056 120 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RNY4P34-201ENST00000364779 95 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIME1Q9H400 SNORA18.3-201ENST00000384122 132 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RNU6-14P-201ENST00000384630 106 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AL354719.1-201ENST00000406535 843 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 RAC1P6-201ENST00000423911 575 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.62□□□□□ -1.99
LIME1Q9H400 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.62□□□□□ -1.99
LIME1Q9H400 RPS24P1-201ENST00000438550 371 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC105272.1-201ENST00000438604 198 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC073614.1-201ENST00000438690 650 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AL136380.1-201ENST00000447970 162 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 AC079448.1-201ENST00000449377 373 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 SNRPGP6-201ENST00000451124 220 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RNU6-420P-201ENST00000458780 107 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
LIME1Q9H400 RPL30P14-201ENST00000482744 348 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.62□□□□□ -1.99
LIME1Q9H400 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.62□□□□□ -1.99
LIME1Q9H400 RNU6-390P-201ENST00000516259 103 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 RNU6-430P-201ENST00000517078 107 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 MTCO2P4-201ENST00000517968 247 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.62□□□□□ -1.99
LIME1Q9H400 ATP5F1P5-201ENST00000526403 760 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms