Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNA5SP210-201ENST00000391034 120 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC078974.1-201ENST00000411597 223 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC096664.2-201ENST00000411843 406 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 USP9YP26-201ENST00000421008 661 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 RPS24P13-201ENST00000442520 397 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC020550.1-201ENST00000447385 163 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 MTCO1P42-201ENST00000457379 726 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC133134.1-201ENST00000466800 359 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC106872.3-201ENST00000495104 446 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC080014.1-201ENST00000496877 1201 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 RNA5SP367-201ENST00000516557 118 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 SNORA31.15-201ENST00000516771 132 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 BTF3P12-201ENST00000519620 469 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC123904.3-201ENST00000547218 814 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC079600.2-201ENST00000550076 130 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 MIR4307-201ENST00000582802 84 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC018638.7-201ENST00000605836 1114 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AL589743.7-201ENST00000612637 233 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AC025594.3-201ENST00000613068 790 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.64□□□□□ -1.99
VPS39Q96JC1 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS39Q96JC1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS39Q96JC1 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 RNU1-73P-201ENST00000383971 164 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 RNU1-138P-201ENST00000384093 164 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 RNU1-52P-201ENST00000384190 164 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 MIR9-1-201ENST00000385198 89 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 RNU6-220P-201ENST00000390919 107 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 RPS4XP7-201ENST00000406274 780 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 MIR1305-201ENST00000408300 86 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC080125.1-201ENST00000414888 684 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 UBE2FP3-201ENST00000436366 524 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 EPS15P1-201ENST00000448836 336 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AL133217.1-201ENST00000450980 425 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 EEF1B2P7-201ENST00000451177 676 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 SRIP1-201ENST00000489235 288 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 RNA5SP216-201ENST00000516111 123 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS39Q96JC1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC004486.1-201ENST00000546846 233 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC008015.1-201ENST00000555505 465 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC091965.4-201ENST00000607691 587 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AL355472.4-201ENST00000610233 626 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 AC091304.6-201ENST00000619761 202 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 U2.21-201ENST00000637295 81 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.63□□□□□ -1.99
VPS39Q96JC1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS39Q96JC1 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS39Q96JC1 Z82209.1-201ENST00000422141 2135 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS39Q96JC1 U8.14-201ENST00000390843 143 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 RNU6-920P-201ENST00000410926 92 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 RPL26P27-201ENST00000414397 437 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 VPS26BP1-201ENST00000417155 755 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 SKA2P1-201ENST00000425592 390 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 MICF-203ENST00000432679 129 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 RPL7P34-201ENST00000433316 712 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 MTND1P28-201ENST00000435623 950 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 MTND1P26-201ENST00000440488 538 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 MTATP6P30-201ENST00000443540 664 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC009961.3-201ENST00000449832 765 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 CECR9-201ENST00000453421 199 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 ZNF114P1-201ENST00000453500 292 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 ART2BP-201ENST00000453501 499 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC004263.1-201ENST00000479327 332 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 RPS3AP14-201ENST00000483907 780 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC055855.1-201ENST00000489563 579 ntBASIC2.62□□□□□ -1.99
VPS39Q96JC1 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS39Q96JC1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS39Q96JC1 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms