Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-754P-201ENST00000391166 107 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AL360182.1-201ENST00000397433 468 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-985P-201ENST00000410182 104 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 RPS15AP40-201ENST00000419621 391 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AL158156.1-201ENST00000422509 473 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 CYCSP32-201ENST00000440548 321 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AL035666.1-201ENST00000446195 348 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 BTF3P15-201ENST00000455606 336 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 SCARNA18-201ENST00000459004 134 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 TRBV12-2-201ENST00000489763 344 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-189P-201ENST00000516120 101 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC135001.1-201ENST00000544546 283 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 MIR4512-201ENST00000583257 77 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 MIR4293-201ENST00000584305 78 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 MIR3149-201ENST00000584629 83 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC011471.1-201ENST00000585766 187 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 VN1R107P-201ENST00000601784 209 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AC103705.1-201ENST00000619013 241 ntBASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
USHBP1Q8N6Y0 AL049641.1-201ENST00000441055 1948 ntBASIC4.84□□□□□ -1.64
USHBP1Q8N6Y0 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 SCN1A-220ENST00000641603 12506 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RNU4-35P-201ENST00000362588 141 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-601P-201ENST00000384540 107 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RPS12P24-201ENST00000412619 387 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RPL30P2-201ENST00000414021 291 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AL138785.1-201ENST00000425821 331 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC017083.1-201ENST00000428093 483 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC005300.1-201ENST00000428401 373 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 CALM2P2-201ENST00000428512 440 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 MTND1P17-201ENST00000448961 204 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 SNORD105B-201ENST00000458770 79 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RPL21P93-201ENST00000480465 489 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 RANP9-201ENST00000519957 271 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 SETP7-201ENST00000552169 453 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AC098657.3-201ENST00000620434 263 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 U4.6-201ENST00000621618 127 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 AL133383.2-201ENST00000622958 2336 ntBASIC4.83□□□□□ -1.64
USHBP1Q8N6Y0 ZNF33CP-201ENST00000432492 2030 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 EXOC5P1-201ENST00000510543 1969 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 ASNSP1-201ENST00000518311 1939 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RNA5SP52-201ENST00000362448 134 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 Y_RNA.148-201ENST00000363557 117 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 Y_RNA.158-201ENST00000363651 101 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-550P-201ENST00000391057 101 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MIR450B-201ENST00000401182 78 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RPL7P10-201ENST00000417407 739 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 ATG3P1-201ENST00000419507 911 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 BX842559.1-201ENST00000419615 532 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RAC1P6-201ENST00000423911 575 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MTCYBP9-201ENST00000431021 303 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC073587.1-201ENST00000447093 876 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RPL21P10-201ENST00000463521 490 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RPL21P8-201ENST00000465083 535 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 RPS27AP1-201ENST00000475545 471 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 MTCO2P24-201ENST00000515611 426 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 SCARNA13-201ENST00000516672 275 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 DEFB108D-201ENST00000527787 222 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC110588.1-201ENST00000559699 137 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC006077.1-201ENST00000604746 343 ntBASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.82□□□□□ -1.64
USHBP1Q8N6Y0 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms