Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR93-201ENST00000385024 80 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 MIR513A2-201ENST00000385249 127 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 SOD2P1-201ENST00000396543 562 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.12□□□□□ -1.75
USP39Q53GS9 AC114491.1-201ENST00000416095 246 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.12□□□□□ -1.75
USP39Q53GS9 SUMO1P3-201ENST00000439961 304 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.12□□□□□ -1.75
USP39Q53GS9 SNORD121B-201ENST00000458838 81 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 RPL7P49-201ENST00000471402 708 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC078817.1-201ENST00000492623 435 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
USP39Q53GS9 AC104057.1-201ENST00000515547 497 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 RNU2-10P-201ENST00000516375 211 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.12□□□□□ -1.75
USP39Q53GS9 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.12□□□□□ -1.75
USP39Q53GS9 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.12□□□□□ -1.75
USP39Q53GS9 PRR13P7-201ENST00000605538 430 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC069200.1-201ENST00000609511 323 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AL138726.1-201ENST00000614873 333 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC133104.2-201ENST00000615272 193 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.12□□□□□ -1.75
USP39Q53GS9 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.12□□□□□ -1.75
USP39Q53GS9 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
USP39Q53GS9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 RNU6-179P-201ENST00000363350 107 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 RNU6-61P-201ENST00000365528 109 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 DEFB109C-201ENST00000382575 264 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 DEFB109B-201ENST00000382656 264 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 RNU6-213P-201ENST00000384051 104 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 SNORA75B-201ENST00000384053 137 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 RNU6-890P-201ENST00000384121 107 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 Y_RNA.645-201ENST00000391229 102 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 EIF4E2P1-201ENST00000393781 255 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 RNU2-3P-201ENST00000410144 191 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.11□□□□□ -1.75
USP39Q53GS9 EZH2P1-201ENST00000431167 291 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC069285.2-201ENST00000440210 275 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AC006011.1-201ENST00000442758 349 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 NOTCH2P1-201ENST00000443481 624 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 RPL29P29-201ENST00000448725 423 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 SUMO1P2-201ENST00000452524 304 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AC128713.1-201ENST00000471495 306 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC107222.1-201ENST00000510899 637 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AC104136.1-201ENST00000512969 394 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AP005902.1-201ENST00000521358 186 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 MIR4504-201ENST00000577413 92 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AL121772.2-201ENST00000614331 297 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AL355365.1-201ENST00000616480 294 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 MIR7151-201ENST00000617477 60 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 PLCE1P1-201ENST00000622094 305 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AL357559.1-201ENST00000622228 274 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 AL732372.2-225ENST00000642124 456 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.11□□□□□ -1.75
USP39Q53GS9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 BDP1P-201ENST00000582658 1990 ntBASIC4.11□□□□□ -1.75
USP39Q53GS9 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP39Q53GS9 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.1□□□□□ -1.75
USP39Q53GS9 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
USP39Q53GS9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.1□□□□□ -1.75
USP39Q53GS9 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.1□□□□□ -1.75
USP39Q53GS9 RNU6-525P-201ENST00000363685 104 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 SNORA24.1-201ENST00000384401 135 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 Y_RNA.576-201ENST00000384781 102 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 RAB9AP3-201ENST00000412737 573 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 RPL7P28-201ENST00000437739 740 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC016696.1-201ENST00000446949 318 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 RAB9AP1-201ENST00000449393 573 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AL353691.1-201ENST00000451332 387 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC010469.1-201ENST00000463864 576 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.1□□□□□ -1.75
USP39Q53GS9 AC110794.1-201ENST00000505816 425 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 MRPS35P2-201ENST00000508242 191 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC008526.1-201ENST00000509149 338 ntBASIC4.1□□□□□ -1.75
USP39Q53GS9 AC023141.12-201ENST00000512399 199 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms