Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 RNU6-1293P-201ENST00000384077 107 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC244035.1-201ENST00000430042 390 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 ERHP1-201ENST00000523006 310 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 NOP56P3-201ENST00000549457 385 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.8□□□□□ -2.28
CHD9Q3L8U1 UBE2L4-201ENST00000587688 464 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC073111.2-201ENST00000605657 1075 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AL355810.1-201ENST00000614629 552 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 AC140725.3-201ENST00000616193 880 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 RNU6-156P-201ENST00000621869 107 ntBASIC0.8□□□□□ -2.28
CHD9Q3L8U1 Z82195.2-201ENST00000612348 18351 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 RNU4-72P-201ENST00000410754 173 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AK3P2-201ENST00000507976 429 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC105914.1-201ENST00000511798 226 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AL590282.1-201ENST00000610379 1136 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 MTND4P27-201ENST00000450813 1354 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC123912.3-201ENST00000600907 1367 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 RNU6-185P-201ENST00000384421 107 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AL136372.1-201ENST00000403060 228 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 USP12PX-201ENST00000432383 1057 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 RABEPKP1-201ENST00000440529 1026 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC104689.1-201ENST00000473356 768 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC087879.1-201ENST00000474343 374 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AP001960.1-201ENST00000506494 658 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC104997.1-201ENST00000519761 717 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 TPTE2P4-201ENST00000258589 1605 ntBASIC0.79□□□□□ -2.28
CHD9Q3L8U1 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
CHD9Q3L8U1 MIR150-201ENST00000385048 84 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 RNU6-837P-201ENST00000391056 108 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AL513475.1-201ENST00000406602 315 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 ARL2BPP3-201ENST00000421226 480 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC000111.3-201ENST00000433478 193 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC023512.1-201ENST00000444513 499 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 BUD31P2-201ENST00000449374 300 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AL121769.1-201ENST00000469473 401 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 NDUFS5P6-201ENST00000529136 295 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 MIR3117-201ENST00000584034 78 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC055876.5-201ENST00000605667 259 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC009812.4-201ENST00000569134 1805 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 RNU6-244P-201ENST00000391028 104 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 RNU2-21P-201ENST00000410368 188 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC092745.2-202ENST00000411880 369 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 ELOCP11-201ENST00000436690 332 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AL022238.1-201ENST00000442557 355 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 ELOCP16-201ENST00000444494 332 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 RPL9P9-202ENST00000466501 579 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC004062.1-201ENST00000509926 645 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC010625.1-201ENST00000511296 403 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 MTCO2P22-201ENST00000603246 681 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 MTND4LP5-201ENST00000605152 292 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AC020658.4-201ENST00000613987 684 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.78□□□□□ -2.28
CHD9Q3L8U1 CCT4P2-201ENST00000233836 1548 ntBASIC0.78□□□□□ -2.28
CHD9Q3L8U1 MTCO3P4-201ENST00000419236 787 ntBASIC0.78□□□□□ -2.29
CHD9Q3L8U1 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC0.78□□□□□ -2.29
CHD9Q3L8U1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.78□□□□□ -2.29
CHD9Q3L8U1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
CHD9Q3L8U1 CDC42P4-201ENST00000510507 563 ntBASIC0.78□□□□□ -2.29
CHD9Q3L8U1 SNORA31.20-201ENST00000517111 133 ntBASIC0.78□□□□□ -2.29
CHD9Q3L8U1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 RNU6-222P-201ENST00000362438 107 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 RPL23AP32-201ENST00000395315 459 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MTCO3P46-201ENST00000425787 232 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 OSTCP8-201ENST00000445117 448 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MTATP6P7-201ENST00000453315 681 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 NAP1L1P3-201ENST00000462291 880 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC0.77□□□□□ -2.29
CHD9Q3L8U1 MRPS17P9-201ENST00000511924 393 ntBASIC0.77□□□□□ -2.29
CHD9Q3L8U1 RNU6-1308P-201ENST00000516817 103 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms