Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC073544.1-201ENST00000600110 1595 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 ZNF285B-201ENST00000561698 1767 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 OR4G2P-202ENST00000641004 1759 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
PTCHD3Q3KNS1 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.65□□□□□ -1.82
PTCHD3Q3KNS1 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
PTCHD3Q3KNS1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
PTCHD3Q3KNS1 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-288P-201ENST00000363690 104 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 SNORD81.2-201ENST00000365153 76 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.530-201ENST00000384587 101 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AL139397.2-201ENST00000404529 772 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-1148P-201ENST00000410992 104 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 RNU2-71P-201ENST00000411395 189 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 MTND3P8-201ENST00000412909 339 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 RPL7P10-201ENST00000417407 739 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 PDCL2P1-201ENST00000419302 352 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 NCOR1P3-201ENST00000420479 303 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC008264.1-201ENST00000447612 367 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AL590639.1-201ENST00000456484 337 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 RN7SL93P-201ENST00000463035 293 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AP001086.1-201ENST00000494882 321 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 MTCO3P9-201ENST00000506989 781 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 CCDC34P1-201ENST00000507441 517 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 APOOP4-201ENST00000513530 597 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 SNORA70.14-201ENST00000516205 110 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 OR11H5P-201ENST00000554039 926 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 MIR3941-201ENST00000582572 103 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC002545.1-201ENST00000592511 181 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC092807.2-201ENST00000609367 243 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 AC107294.1-201ENST00000609524 467 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 TNPO1P3-201ENST00000436471 2662 ntBASIC3.65□□□□□ -1.83
PTCHD3Q3KNS1 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC008568.2-201ENST00000623862 2313 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 SNORA71.3-201ENST00000362582 128 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RNU1-18P-201ENST00000363062 164 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.167-201ENST00000363735 109 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 Y_RNA.534-201ENST00000384599 112 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 CISD1P1-201ENST00000393907 327 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RNA5SP111-201ENST00000411386 101 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC092809.3-201ENST00000415453 231 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 USP9YP20-201ENST00000419224 558 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RPL21P109-201ENST00000422213 475 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL139247.1-201ENST00000422768 325 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL160275.3-201ENST00000423876 471 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL591419.1-201ENST00000427423 339 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL365400.1-201ENST00000431854 640 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL358232.1-201ENST00000448030 501 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RPS15AP27-201ENST00000449183 343 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RNU6-329P-201ENST00000459618 107 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RPL37P6-201ENST00000460682 294 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RPL7P20-201ENST00000520308 745 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC107953.1-201ENST00000522216 297 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 OR5D17P-201ENST00000531492 978 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL118558.2-201ENST00000556294 238 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 MIR3690-201ENST00000580266 75 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 MIR4719-201ENST00000585233 84 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC110741.2-201ENST00000605278 268 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC021646.1-201ENST00000605469 484 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AL022345.1-201ENST00000607292 135 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC090132.2-201ENST00000615881 347 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 AC106871.1-201ENST00000568324 3102 ntBASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.64□□□□□ -1.83
PTCHD3Q3KNS1 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 AC066616.2-201ENST00000559334 1481 ntBASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
PTCHD3Q3KNS1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms