Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
COL7A1Q02388 Y_RNA.35-201ENST00000362601 101 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL7A1Q02388 RNA5SP511-201ENST00000410487 115 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AL022718.1-201ENST00000412004 84 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 SDAD1P3-201ENST00000427380 333 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 NAP1L4P3-201ENST00000432820 1147 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 RPS20P10-201ENST00000451209 253 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.54□□□□□ -2.32
COL7A1Q02388 HMGN1P30-201ENST00000589286 268 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AL096840.1-201ENST00000603287 93 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC008555.8-201ENST00000623602 2168 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
COL7A1Q02388 MIR153-2-201ENST00000385225 87 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC096632.1-201ENST00000427395 310 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC018437.1-201ENST00000492214 406 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL7A1Q02388 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.54□□□□□ -2.32
COL7A1Q02388 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL7A1Q02388 OR5BM1P-201ENST00000512021 366 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
COL7A1Q02388 RNA5SP471-201ENST00000516971 106 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 IGLVI-20-201ENST00000519296 130 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AL133507.1-201ENST00000605269 557 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 OR4G3P-201ENST00000633500 913 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.54□□□□□ -2.32
COL7A1Q02388 ELL2P3-201ENST00000457883 1602 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 RPL17P49-201ENST00000443728 411 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AL121839.1-201ENST00000556233 1185 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.54□□□□□ -2.32
COL7A1Q02388 AL390240.1-201ENST00000612950 384 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.54□□□□□ -2.32
COL7A1Q02388 ZNF33BP1-201ENST00000452497 1834 ntBASIC0.54□□□□□ -2.32
COL7A1Q02388 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.53□□□□□ -2.32
COL7A1Q02388 RPL21P24-201ENST00000413752 448 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC0.53□□□□□ -2.32
COL7A1Q02388 AC117503.1-201ENST00000472241 394 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 LDHBP3-201ENST00000514909 822 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
COL7A1Q02388 AP006248.3-201ENST00000623580 594 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 AL118508.4-201ENST00000624142 1176 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.53□□□□□ -2.32
COL7A1Q02388 HAUS6P2-201ENST00000433254 2404 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 RNU6-335P-201ENST00000364563 113 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 VN1R42P-201ENST00000424651 344 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.53□□□□□ -2.32
COL7A1Q02388 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 AC093155.1-201ENST00000440164 826 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 AC023141.11-201ENST00000508864 202 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 CYCSP26-201ENST00000534107 320 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 MIR4287-201ENST00000579398 78 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 MIR4658-201ENST00000584344 65 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 SDR42E1P2-201ENST00000614861 481 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.53□□□□□ -2.32
COL7A1Q02388 SDR42E1P4-201ENST00000620894 481 ntBASIC0.53□□□□□ -2.32
COL7A1Q02388 RNU6-112P-201ENST00000363599 104 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.52□□□□□ -2.33
COL7A1Q02388 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL7A1Q02388 USP12PX-201ENST00000432383 1057 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC0.52□□□□□ -2.33
COL7A1Q02388 MTCO3P35-201ENST00000485582 781 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC0.52□□□□□ -2.33
COL7A1Q02388 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL7A1Q02388 AC023050.1-201ENST00000498198 304 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC020699.1-201ENST00000505161 445 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL7A1Q02388 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL7A1Q02388 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.52□□□□□ -2.33
COL7A1Q02388 AC008083.4-201ENST00000615076 444 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 U4.2-201ENST00000618561 85 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AP003122.6-201ENST00000623831 495 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC079780.1-201ENST00000428259 207 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AL353898.1-201ENST00000444055 238 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC005410.1-202ENST00000460347 485 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 PABPC1P3-201ENST00000469174 459 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
COL7A1Q02388 RNU6-970P-201ENST00000516312 107 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 OR6C73P-201ENST00000546432 358 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 HSBP1P1-201ENST00000555205 166 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.52□□□□□ -2.33
COL7A1Q02388 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.52□□□□□ -2.33
COL7A1Q02388 AC022387.2-201ENST00000604050 448 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC067838.1-201ENST00000606064 577 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC004908.2-201ENST00000609090 574 ntBASIC0.52□□□□□ -2.33
COL7A1Q02388 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms