Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
COL6A5A8TX70 MTND4P27-201ENST00000450813 1354 ntBASIC0.7□□□□□ -2.3
COL6A5A8TX70 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 MTATP6P4-201ENST00000427725 675 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 HMGB3P17-201ENST00000504195 649 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC087465.1-201ENST00000560574 245 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC106028.5-201ENST00000610332 395 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 RNA5SP347-201ENST00000362445 119 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 U8.3-201ENST00000363321 132 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 SNORD14B-201ENST00000364533 90 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 MIR513A1-201ENST00000385138 129 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 RPS29P23-201ENST00000458635 123 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 SNORD114-21-201ENST00000606412 72 ntBASIC0.69□□□□□ -2.3
COL6A5A8TX70 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.69□□□□□ -2.3
COL6A5A8TX70 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
COL6A5A8TX70 SNORD118-201ENST00000363593 134 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 Y_RNA.293-201ENST00000364908 93 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AL356867.1-201ENST00000429623 299 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC022880.1-201ENST00000534017 973 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC009220.3-201ENST00000604318 586 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 FAM71BP1-201ENST00000604431 523 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC243829.6-201ENST00000612652 106 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AL161722.3-201ENST00000605789 2983 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 RPS20P10-201ENST00000451209 253 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 PABPC1P3-201ENST00000469174 459 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 DEFB108E-201ENST00000524692 240 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC093788.1-201ENST00000609356 927 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
COL6A5A8TX70 ELL2P3-201ENST00000457883 1602 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 OR6C66P-201ENST00000414917 930 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 BTF3P12-201ENST00000519620 469 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 CASP1P1-201ENST00000526345 212 ntBASIC0.68□□□□□ -2.3
COL6A5A8TX70 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.68□□□□□ -2.3
COL6A5A8TX70 RNU4-42P-201ENST00000364738 142 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 RNU6-1077P-201ENST00000410506 102 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 RPS20P15-201ENST00000412792 311 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 RPL31P58-201ENST00000469001 379 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 AC078857.1-201ENST00000469870 667 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 AC068620.4-201ENST00000636730 1182 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 ZNF519P1-201ENST00000449011 1626 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 RNU1-62P-201ENST00000362599 164 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 Y_RNA.552-201ENST00000384665 112 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 PTGES3P2-201ENST00000407942 482 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 VPS26BP1-201ENST00000417155 755 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.67□□□□□ -2.3
COL6A5A8TX70 MIR198-201ENST00000637333 62 ntBASIC0.67□□□□□ -2.3
COL6A5A8TX70 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.66□□□□□ -2.3
COL6A5A8TX70 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
COL6A5A8TX70 RNA5SP98-201ENST00000363158 137 ntBASIC0.66□□□□□ -2.3
COL6A5A8TX70 SNORA7.2-201ENST00000364446 145 ntBASIC0.66□□□□□ -2.3
COL6A5A8TX70 RNU6-1072P-201ENST00000384703 107 ntBASIC0.66□□□□□ -2.3
COL6A5A8TX70 RNU6-443P-201ENST00000384780 107 ntBASIC0.66□□□□□ -2.3
COL6A5A8TX70 AL591034.1-201ENST00000407447 340 ntBASIC0.66□□□□□ -2.3
COL6A5A8TX70 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
COL6A5A8TX70 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.66□□□□□ -2.3
COL6A5A8TX70 AC093155.1-201ENST00000440164 826 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms