Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC002400.1-201ENST00000569310 726 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 U73023.1-201ENST00000603134 700 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AP000787.2-201ENST00000604432 568 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC018638.7-201ENST00000605836 1114 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 MIR6852-201ENST00000621699 66 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 AC110079.1-202ENST00000635213 138 ntBASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS54Q9P1Q0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RNU6-500P-201ENST00000362349 107 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 DEFA7P-201ENST00000382676 285 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 TAS2R15P-201ENST00000390674 928 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RPS20P2-201ENST00000402520 389 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AL359511.1-201ENST00000402970 211 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 Z82210.1-201ENST00000440037 231 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AIG1P1-201ENST00000503376 148 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC114781.4-201ENST00000513707 639 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RNU6-826P-201ENST00000516827 104 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RNU6-64P-201ENST00000517119 105 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC109329.2-201ENST00000519658 482 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 MIR3670-2-201ENST00000582974 65 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 MIR3670-1-201ENST00000584160 65 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 MIR3670-3-201ENST00000584855 65 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC002545.1-201ENST00000592511 181 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC026790.2-201ENST00000606282 430 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 MIR3670-4-201ENST00000612260 65 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AP000770.2-201ENST00000623694 100 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 AC026241.1-201ENST00000517873 2142 ntBASIC2.8□□□□□ -1.96
VPS54Q9P1Q0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AL445523.1-201ENST00000451184 1362 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 RNU6-741P-201ENST00000383889 107 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 RNU6-809P-201ENST00000384461 107 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 MTCYBP36-201ENST00000404146 440 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 RPS27AP14-201ENST00000422868 454 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 USP12PX-201ENST00000432383 1057 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 UBE2D3P1-201ENST00000436669 444 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AL512286.1-201ENST00000439244 400 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AL049734.2-201ENST00000441066 616 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC104389.3-201ENST00000445629 235 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 MTND4LP3-201ENST00000468320 276 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC004263.1-201ENST00000479327 332 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AF131216.2-201ENST00000512316 564 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC114797.1-201ENST00000514003 728 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 RNA5SP291-201ENST00000517222 105 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC007115.1-201ENST00000546853 234 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC245517.5-201ENST00000611529 162 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 MTND1P37-201ENST00000636562 264 ntBASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
VPS54Q9P1Q0 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 RNU6-278P-201ENST00000390945 109 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL513331.1-201ENST00000411908 397 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 MTND5P25-201ENST00000430499 799 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL365184.2-201ENST00000431139 435 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 RPS12P2-201ENST00000439728 269 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC005094.1-201ENST00000440420 368 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 ZNF114P1-201ENST00000453500 292 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 RPL36AP51-201ENST00000487216 318 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AC123904.2-201ENST00000548059 300 ntBASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS54Q9P1Q0 AL356432.3-201ENST00000568952 465 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms