Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SNORD114-30-201ENST00000364448 72 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 SNORA36C-201ENST00000384289 132 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 RN7SKP192-201ENST00000411291 327 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC092573.2-201ENST00000434546 243 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC125238.1-201ENST00000448842 249 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 MTND1P3-201ENST00000484956 952 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 RNU6-64P-201ENST00000517119 105 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC022690.1-201ENST00000526681 550 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 MIR3682-201ENST00000581338 84 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC002545.1-201ENST00000592511 181 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC008962.1-201ENST00000605729 304 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC025754.2-201ENST00000606491 432 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 RN7SKP299-201ENST00000606679 301 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 AC135507.1-201ENST00000607214 561 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 CTSLP2-204ENST00000629029 392 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 CUL1P1-201ENST00000509510 2425 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZNF541Q9H0D2 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 FGF7P2-201ENST00000332473 296 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 MIR148B-201ENST00000362252 99 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 RNY1P12-201ENST00000364251 105 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 RNU4-91P-201ENST00000364778 135 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 RNU6-805P-201ENST00000365643 106 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 MIR514A1-201ENST00000385133 98 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 RN7SKP140-201ENST00000411196 284 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 HMGN1P14-201ENST00000412459 517 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC112220.1-201ENST00000434628 355 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 MTND1P28-201ENST00000435623 950 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 ST13P20-201ENST00000447996 1065 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC010631.1-201ENST00000474150 156 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 CDC42P4-201ENST00000510507 563 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AP003181.2-201ENST00000528941 181 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC012414.6-201ENST00000568241 401 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC005771.1-201ENST00000585581 349 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC009977.1-201ENST00000586015 570 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 BX664608.1-201ENST00000610519 487 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC104010.1-201ENST00000616889 150 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 FRG1KP-201ENST00000623592 341 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC093010.3-201ENST00000570269 15214 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 AC092104.1-201ENST00000497346 1441 ntBASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.25□□□□□ -1.89
ZNF541Q9H0D2 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 Y_RNA.201-201ENST00000364052 96 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 SNORA46-201ENST00000384762 135 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 MIR512-1-201ENST00000384913 84 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 RNU6-1197P-201ENST00000391183 107 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC127391.1-201ENST00000411737 98 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 HMGB3P23-201ENST00000414981 585 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 UBE2D3P2-201ENST00000424409 445 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC137499.1-201ENST00000427602 88 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AL360221.1-201ENST00000445989 335 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 SSXP4-201ENST00000451349 245 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 SRIP1-201ENST00000489235 288 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC010587.1-201ENST00000505809 469 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 RNU6-991P-201ENST00000516168 107 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 RNA5SP320-201ENST00000516263 124 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AP003467.2-201ENST00000520175 319 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC011979.2-201ENST00000527568 352 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 MIR4474-201ENST00000579189 78 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 MIR3118-1-201ENST00000581787 76 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC040904.1-201ENST00000590850 223 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC007621.1-201ENST00000604544 437 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AL391813.2-201ENST00000609113 322 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms