Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RPEP3-201ENST00000425462 676 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AL353997.1-201ENST00000432936 108 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AL031274.1-201ENST00000450334 232 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RPL7AP28-201ENST00000464513 571 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RPS23P3-201ENST00000470993 430 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC110792.1-201ENST00000491826 472 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC022447.4-201ENST00000504053 364 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC113155.1-201ENST00000511141 769 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU1-86P-201ENST00000516108 154 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU1-107P-201ENST00000516617 154 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC098826.3-201ENST00000603823 466 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AC011373.1-201ENST00000607270 237 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 AL442067.1-201ENST00000613261 223 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RMST_4.1-201ENST00000616886 107 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 OR4G2P-202ENST00000641004 1759 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 OR56B2P-202ENST00000641377 2453 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MFSD8-242ENST00000641690 4199 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 RNU6-1167P-201ENST00000363227 94 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.577-201ENST00000384794 101 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MIR129-1-201ENST00000384972 72 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MIR514A1-201ENST00000385133 98 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 RN7SKP216-201ENST00000411050 312 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 RNU6-325P-201ENST00000411132 105 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AC114801.2-201ENST00000503825 781 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MLLT10P2-201ENST00000506434 249 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 SLC25A15P5-201ENST00000508033 253 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 ACA59.1-201ENST00000515966 143 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AL157871.3-201ENST00000557231 293 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 RN7SL176P-201ENST00000580352 264 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 MIR4715-201ENST00000584117 79 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 AL021879.1-201ENST00000611756 288 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 RAD17P1-201ENST00000418130 2042 ntBASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD1Q96NR3 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.48-201ENST00000362710 103 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.106-201ENST00000363189 100 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.126-201ENST00000363382 111 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 RNU6-395P-201ENST00000365662 106 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.512-201ENST00000384518 102 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 MIR659-201ENST00000384963 97 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC244098.2-201ENST00000422068 99 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 RPL7AP25-201ENST00000423357 805 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Z74021.1-201ENST00000423610 407 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC006946.1-201ENST00000429106 328 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 USP9YP7-201ENST00000436723 430 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 USP9YP32-201ENST00000452432 430 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 SNORD108-201ENST00000459332 71 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 FTH1P2-201ENST00000466086 412 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 RPL21P126-201ENST00000470049 478 ntBASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PTCHD1Q96NR3 S100A11P1-201ENST00000477525 312 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms