Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 SNORA31.3-201ENST00000516029 96 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AP003467.2-201ENST00000520175 319 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC022634.1-201ENST00000520765 532 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 MTCO1P47-201ENST00000523889 1271 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 SUB1P1-201ENST00000524415 382 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 RPL21P5-201ENST00000554662 472 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC025281.1-201ENST00000567026 265 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 HMGN1P30-201ENST00000589286 268 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC103710.2-201ENST00000609912 942 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC007998.5-201ENST00000622938 237 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC025048.6-202ENST00000627667 438 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AL359693.1-201ENST00000614959 2407 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 AC009487.2-201ENST00000420969 6821 ntBASIC3.15□□□□□ -1.91
PRPF39Q86UA1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
PRPF39Q86UA1 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 SNORA71.1-201ENST00000364523 117 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 SNORA51.4-201ENST00000364993 124 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RNU5E-6P-201ENST00000365574 115 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RNU6-817P-201ENST00000391083 104 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 SNORA26.8-201ENST00000391306 124 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AL139397.2-201ENST00000404529 772 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RN7SKP58-201ENST00000411010 305 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 GTF2IP20-201ENST00000431663 360 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RPS15AP5-201ENST00000436276 388 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 SNORA59A-201ENST00000459326 152 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 MTND1P3-201ENST00000484956 952 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RN7SL20P-201ENST00000488827 297 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC009901.1-201ENST00000506703 541 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC008885.1-201ENST00000514930 301 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 Y_RNA.672-201ENST00000516289 104 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 RNU6-677P-201ENST00000516914 101 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC007834.2-201ENST00000536310 343 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC008088.1-201ENST00000580993 280 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC020895.1-201ENST00000595362 272 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 BNIP3P9-201ENST00000603714 553 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC093732.2-201ENST00000607950 274 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC008250.2-201ENST00000615261 205 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC108479.2-201ENST00000617314 601 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC006386.2-201ENST00000624491 75 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AC012005.1-201ENST00000624575 75 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.14□□□□□ -1.91
PRPF39Q86UA1 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.14□□□□□ -1.91
PRPF39Q86UA1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC000403.1-201ENST00000613696 3585 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 SNORD56.2-201ENST00000363242 71 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 RNY1P12-201ENST00000364251 105 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 RNU6-7-201ENST00000364784 107 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 RNU6-8-201ENST00000365467 107 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AL122016.1-201ENST00000403365 367 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 RPL5P18-201ENST00000406671 891 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 BMS1P22-201ENST00000414726 313 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 CYCSP46-201ENST00000423569 204 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC022018.1-201ENST00000430685 241 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 NDUFB4P2-201ENST00000509515 391 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 RN7SKP272-201ENST00000516988 232 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC087373.1-201ENST00000524920 491 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 OSBPL9P5-201ENST00000542581 171 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AC009977.1-201ENST00000586015 570 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRPF39Q86UA1 AL355596.1-201ENST00000565399 3996 ntBASIC3.13□□□□□ -1.91
PRPF39Q86UA1 FAM35CP-201ENST00000554755 2470 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.12□□□□□ -1.91
PRPF39Q86UA1 SMIM11P1-201ENST00000369586 178 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 SNORD67-201ENST00000390833 111 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.12□□□□□ -1.91
PRPF39Q86UA1 RN7SKP220-201ENST00000410611 288 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 RNU2-49P-201ENST00000410666 184 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 NDUFS5P4-201ENST00000412983 318 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 AC007283.2-201ENST00000424739 197 ntBASIC3.12□□□□□ -1.91
PRPF39Q86UA1 RPL7P37-201ENST00000425095 738 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms