Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 RPS3AP52-201ENST00000435639 297 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.25□□□□□ -1.73
KRT40Q6A162 CYCSP35-201ENST00000451978 304 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 ST13P14-201ENST00000474095 734 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 S100A11P1-201ENST00000477525 312 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AC106707.2-201ENST00000484182 374 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 RPS15AP36-201ENST00000492022 382 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 AC098591.2-201ENST00000510152 315 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 RNU6-864P-201ENST00000516256 108 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 RNU6-1088P-201ENST00000516850 104 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.25□□□□□ -1.73
KRT40Q6A162 MIR5187-201ENST00000583479 76 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.25□□□□□ -1.73
KRT40Q6A162 KLKP1-201ENST00000595979 403 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AL022099.1-201ENST00000604551 712 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AL360085.1-201ENST00000604713 532 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.25□□□□□ -1.73
KRT40Q6A162 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 AL390240.1-201ENST00000612950 384 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.25□□□□□ -1.73
KRT40Q6A162 uc_338.34-201ENST00000617467 174 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.25□□□□□ -1.73
KRT40Q6A162 MIR4496-201ENST00000635896 61 ntBASIC4.25□□□□□ -1.73
KRT40Q6A162 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
KRT40Q6A162 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.25□□□□□ -1.73
KRT40Q6A162 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
KRT40Q6A162 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.24□□□□□ -1.73
KRT40Q6A162 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC073073.2-201ENST00000609827 2578 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 RNU6-960P-201ENST00000364056 120 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 Y_RNA.339-201ENST00000365325 102 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 Y_RNA.414-201ENST00000384011 101 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 MIR490-201ENST00000384865 128 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 MIR3074-201ENST00000384885 81 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
KRT40Q6A162 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 AL391417.1-201ENST00000404100 426 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 MTND2P23-201ENST00000422990 651 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 PSMA2P3-201ENST00000429685 675 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.24□□□□□ -1.73
KRT40Q6A162 RPL36AP6-201ENST00000435770 321 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 MTND4P19-201ENST00000446659 478 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.24□□□□□ -1.73
KRT40Q6A162 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AL121576.1-201ENST00000556055 276 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AL121821.2-201ENST00000556081 394 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 FRG2DP-202ENST00000566967 323 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AC012669.1-201ENST00000603209 283 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AP001836.1-201ENST00000604675 523 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AC004696.1-201ENST00000614345 607 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AL359757.2-201ENST00000624309 274 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC244205.2-202ENST00000635781 342 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 AP000553.6-201ENST00000641242 118 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 AC007390.2-201ENST00000606229 3803 ntBASIC4.24□□□□□ -1.73
KRT40Q6A162 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.24□□□□□ -1.73
KRT40Q6A162 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
KRT40Q6A162 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.23□□□□□ -1.73
KRT40Q6A162 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.23□□□□□ -1.73
KRT40Q6A162 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.23□□□□□ -1.73
KRT40Q6A162 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
KRT40Q6A162 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.23□□□□□ -1.73
KRT40Q6A162 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
KRT40Q6A162 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
KRT40Q6A162 Y_RNA.259-201ENST00000364619 101 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 RNU6-283P-201ENST00000364788 107 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 SNORD42.2-201ENST00000365570 69 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 SMIM11P1-201ENST00000369586 178 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 Y_RNA.384-201ENST00000383909 102 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 RNU6-43P-201ENST00000384302 107 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 Y_RNA.530-201ENST00000384587 101 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 Y_RNA.579-201ENST00000390939 94 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 RAC1P3-201ENST00000416129 580 ntBASIC4.23□□□□□ -1.73
KRT40Q6A162 MRPS18BP2-201ENST00000434310 759 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms