Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC244100.1-202ENST00000621554 382 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 TAB3P1-202ENST00000452645 1634 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RNA5SP295-201ENST00000362655 121 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RNU6-511P-201ENST00000363496 107 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RNU5E-8P-201ENST00000363502 116 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RNA5SP50-201ENST00000363731 107 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.381-201ENST00000365666 102 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MIR135A2-201ENST00000384854 100 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MIR7-3-201ENST00000384898 110 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MIR558-201ENST00000384920 94 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RPS20P5-201ENST00000434808 360 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC008264.1-201ENST00000447612 367 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 HMGB3P8-201ENST00000449709 577 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 CYCSP35-201ENST00000451978 304 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 PRSS3P4-201ENST00000453323 162 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AL136097.1-201ENST00000456945 913 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RPL23AP62-201ENST00000463396 453 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RPL7P23-201ENST00000493874 747 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 HMGN1P12-201ENST00000499125 195 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MIR3186-201ENST00000577404 85 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 BNIP3P10-201ENST00000605360 577 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC103710.3-201ENST00000608157 948 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 RMST_3.1-201ENST00000611651 109 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC024940.5-201ENST00000622889 474 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS53Q5VIR6 MTCO1P9-201ENST00000505577 1534 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC017071.1-201ENST00000564407 2204 ntBASIC4.05□□□□□ -1.76
VPS53Q5VIR6 AC002546.1-201ENST00000588041 2504 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC010733.2-201ENST00000589496 5702 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU1-75P-201ENST00000347264 129 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.11-201ENST00000362375 109 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.72-201ENST00000362894 103 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU6-694P-201ENST00000364071 147 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU4-48P-201ENST00000365559 182 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU6-39P-201ENST00000384344 107 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU6-328P-201ENST00000390887 106 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU6-754P-201ENST00000391166 107 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL354719.1-201ENST00000406535 843 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU6-373P-201ENST00000411247 98 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 OR9R1P-201ENST00000412200 877 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 OR51A5P-201ENST00000415429 942 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL513185.2-201ENST00000425543 193 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 MED13P1-201ENST00000428342 171 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC016696.1-201ENST00000446949 318 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC006539.3-201ENST00000454258 129 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU7-63P-201ENST00000459054 62 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RPL23AP14-201ENST00000468281 468 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RPL7P49-201ENST00000471402 708 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC078785.3-201ENST00000476607 425 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RPL39P36-201ENST00000490784 156 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 MTCO2P30-201ENST00000503662 364 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 VN1R104P-201ENST00000505115 1009 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU2-10P-201ENST00000516375 211 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL133271.1-201ENST00000538229 291 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 OR4K8P-201ENST00000578842 1048 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC015917.1-201ENST00000579654 510 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 BDH2P1-201ENST00000602288 736 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 C8orf59P2-201ENST00000603441 271 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AC093838.1-201ENST00000613014 469 ntBASIC4.04□□□□□ -1.76
VPS53Q5VIR6 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS53Q5VIR6 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS53Q5VIR6 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms