Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORD3H-201ENST00000384486 214 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RNU6-601P-201ENST00000384540 107 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AL360182.1-201ENST00000397433 468 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AL160275.2-201ENST00000412010 394 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 ATG3P1-201ENST00000419507 911 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AL139396.1-201ENST00000421137 167 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RBMY1KP-201ENST00000423480 476 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 RAC1P6-201ENST00000423911 575 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC108059.3-201ENST00000456388 214 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC087879.1-201ENST00000474343 374 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC068305.1-201ENST00000497406 726 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC079140.5-201ENST00000507882 310 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.14□□□□□ -1.75
USP39Q53GS9 OR11H5P-201ENST00000554039 926 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.14□□□□□ -1.75
USP39Q53GS9 MTCO3P23-201ENST00000561363 289 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.14□□□□□ -1.75
USP39Q53GS9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 MYL12BP1-201ENST00000569826 507 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 COX6CP3-201ENST00000580869 223 ntBASIC4.14□□□□□ -1.75
USP39Q53GS9 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.14□□□□□ -1.75
USP39Q53GS9 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USP39Q53GS9 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.14□□□□□ -1.75
USP39Q53GS9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.14□□□□□ -1.75
USP39Q53GS9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.14□□□□□ -1.75
USP39Q53GS9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.13□□□□□ -1.75
USP39Q53GS9 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
USP39Q53GS9 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
USP39Q53GS9 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 SNORD115-7-201ENST00000365306 82 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 RNY1P14-201ENST00000384426 108 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
USP39Q53GS9 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
USP39Q53GS9 RNU2-36P-201ENST00000410361 191 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 SNORA57.3-201ENST00000411095 141 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 POLHP1-201ENST00000411806 470 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC068533.1-201ENST00000418542 415 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC096644.2-201ENST00000429278 159 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 RPL23AP83-201ENST00000434984 473 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC004801.2-202ENST00000463559 283 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC104164.2-201ENST00000496953 495 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC097473.1-201ENST00000508142 408 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC026782.1-201ENST00000512952 449 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 RNU7-51P-201ENST00000516560 62 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 IGKV2-23-201ENST00000518729 323 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AP002404.1-201ENST00000532005 451 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.13□□□□□ -1.75
USP39Q53GS9 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.13□□□□□ -1.75
USP39Q53GS9 AC092747.3-201ENST00000603769 301 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 AC015813.4-201ENST00000610469 179 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 DUSP12P1-201ENST00000612874 516 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 HMGB1P24-202ENST00000615653 685 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.13□□□□□ -1.75
USP39Q53GS9 KPNA2P1-201ENST00000458289 1591 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.13□□□□□ -1.75
USP39Q53GS9 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
USP39Q53GS9 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 ZNF519P1-201ENST00000449011 1626 ntBASIC4.13□□□□□ -1.75
USP39Q53GS9 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP39Q53GS9 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.13□□□□□ -1.75
USP39Q53GS9 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.13□□□□□ -1.75
USP39Q53GS9 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.13□□□□□ -1.75
USP39Q53GS9 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.12□□□□□ -1.75
USP39Q53GS9 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
USP39Q53GS9 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.12□□□□□ -1.75
USP39Q53GS9 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 MTND5P28-201ENST00000438005 1594 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP39Q53GS9 MIR448-201ENST00000362131 111 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 SNORA63.1-201ENST00000362493 131 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 Y_RNA.364-201ENST00000365532 101 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 RHOT1P2-201ENST00000366423 333 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 Y_RNA.496-201ENST00000384444 101 ntBASIC4.12□□□□□ -1.75
USP39Q53GS9 Y_RNA.574-201ENST00000384766 95 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms