Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 OR8K2P-201ENST00000524645 927 ntBASIC1.74□□□□□ -2.13
SCN9AQ15858 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.74□□□□□ -2.13
SCN9AQ15858 AC090330.1-201ENST00000588646 764 ntBASIC1.74□□□□□ -2.13
SCN9AQ15858 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN9AQ15858 AL136363.1-201ENST00000605349 337 ntBASIC1.74□□□□□ -2.13
SCN9AQ15858 AL118556.2-201ENST00000614375 824 ntBASIC1.74□□□□□ -2.13
SCN9AQ15858 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.74□□□□□ -2.13
SCN9AQ15858 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
SCN9AQ15858 AL359851.1-201ENST00000569460 4997 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 RNU6-198P-201ENST00000384258 104 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN9AQ15858 AC234775.1-201ENST00000454247 670 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN9AQ15858 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SCN9AQ15858 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN9AQ15858 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN9AQ15858 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN9AQ15858 ANP32BP3-201ENST00000559213 706 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 MIR6130-201ENST00000619419 109 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 AC004009.2-201ENST00000623016 728 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 AL157770.1-201ENST00000623049 439 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 MIR4275-201ENST00000636486 87 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN9AQ15858 AC011477.1-204ENST00000623416 1325 ntBASIC1.73□□□□□ -2.13
SCN9AQ15858 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
SCN9AQ15858 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
SCN9AQ15858 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SCN9AQ15858 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SCN9AQ15858 Y_RNA.466-201ENST00000384294 113 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 MIR1304-201ENST00000408243 91 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 RNU4-72P-201ENST00000410754 173 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 USP9YP6-201ENST00000413550 854 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 FAM204CP-201ENST00000424489 642 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC092393.1-201ENST00000439625 742 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 BTBD7P2-201ENST00000441962 620 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 RAC1P7-201ENST00000445367 377 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.72□□□□□ -2.13
SCN9AQ15858 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.72□□□□□ -2.13
SCN9AQ15858 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.72□□□□□ -2.13
SCN9AQ15858 AC008015.1-201ENST00000555505 465 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 MIR3660-201ENST00000584845 100 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 RN7SL622P-201ENST00000585292 275 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AL583856.2-201ENST00000606298 543 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC080013.4-201ENST00000607624 649 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC005332.6-201ENST00000613178 446 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC087821.2-201ENST00000637086 450 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.72□□□□□ -2.13
SCN9AQ15858 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SCN9AQ15858 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SCN9AQ15858 SNRPEP3-201ENST00000338402 276 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 PTGES3P2-201ENST00000407942 482 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 AC009238.1-201ENST00000442165 424 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC009237.6-201ENST00000446969 424 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AL359385.1-201ENST00000456509 365 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 CBX3P3-201ENST00000508108 532 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 MIR514B-201ENST00000516774 80 ntBASIC1.72□□□□□ -2.13
SCN9AQ15858 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.72□□□□□ -2.13
SCN9AQ15858 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN9AQ15858 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.72□□□□□ -2.13
SCN9AQ15858 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SCN9AQ15858 Y_RNA.25-201ENST00000362528 102 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 RNU6-1078P-201ENST00000364522 103 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN9AQ15858 RNU6-549P-201ENST00000384433 107 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 SNORD116-23-201ENST00000384645 92 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AL356131.1-201ENST00000405826 414 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 TXNP7-201ENST00000406296 293 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 PSMA6P3-201ENST00000428242 164 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 RPL39P6-201ENST00000448289 150 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 RFC5P1-201ENST00000454419 874 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AC078857.1-201ENST00000469870 667 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN9AQ15858 RPL7P18-201ENST00000478965 734 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 MTCYBP18-201ENST00000501056 747 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AC113155.1-201ENST00000511141 769 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN9AQ15858 RNU6-798P-201ENST00000516912 103 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 BTF3P12-201ENST00000519620 469 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN9AQ15858 AP003049.1-201ENST00000529418 457 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN9AQ15858 AC011260.1-201ENST00000578420 472 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AP000238.1-201ENST00000608759 426 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 DUXAP10-204ENST00000612052 616 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.71□□□□□ -2.14
SCN9AQ15858 OR4G11P-202ENST00000642116 1414 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SCN9AQ15858 CCT4P2-201ENST00000233836 1548 ntBASIC1.71□□□□□ -2.14
SCN9AQ15858 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SCN9AQ15858 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SCN9AQ15858 RNU6-492P-201ENST00000363035 104 ntBASIC1.7□□□□□ -2.14
SCN9AQ15858 MIR506-201ENST00000384998 124 ntBASIC1.7□□□□□ -2.14
SCN9AQ15858 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms