Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AL445183.3-201ENST00000414168 502 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC018630.2-202ENST00000422992 927 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 FAM206BP-201ENST00000510179 541 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 RNA5SP112-201ENST00000515937 99 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 RNU6-295P-201ENST00000516901 104 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 RNU6-250P-201ENST00000516958 103 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 SNORA44.1-201ENST00000517031 108 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 snoZ278.1-201ENST00000517059 112 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 ARL2BPP5-201ENST00000523141 481 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AP004607.1-201ENST00000524456 203 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC084033.1-201ENST00000550830 633 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 ARL2BPP2-201ENST00000550907 489 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC009268.1-201ENST00000561352 1203 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC233702.2-202ENST00000562547 291 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.2□□□□□ -2.22
HIST1H1AQ02539 FTX_3.1-201ENST00000610451 147 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 DUXAP10-204ENST00000612052 616 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC091834.1-201ENST00000614543 472 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC091953.2-201ENST00000623979 160 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 HPVC1-201ENST00000629899 1198 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 AC026634.1-201ENST00000634369 198 ntBASIC1.2□□□□□ -2.22
HIST1H1AQ02539 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 RNU6-251P-201ENST00000363235 104 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 SNORA51.6-201ENST00000384151 125 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 U8.13-201ENST00000390842 128 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 EIF4EP2-201ENST00000422816 654 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 SDAD1P3-201ENST00000427380 333 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 AC098831.1-201ENST00000440661 216 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 AC118469.1-201ENST00000442943 488 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 SSXP1-201ENST00000453640 473 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 RNA5SP291-201ENST00000517222 105 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 BX248123.2-201ENST00000606318 124 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 MIR7974-201ENST00000615835 79 ntBASIC1.19□□□□□ -2.22
HIST1H1AQ02539 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.19□□□□□ -2.22
HIST1H1AQ02539 MTCO1P18-201ENST00000455518 1419 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 UBE2L2-201ENST00000254302 429 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 RNA5SP240-201ENST00000365355 128 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC007098.1-201ENST00000420122 367 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 BPY2DP-201ENST00000422208 265 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 RPS29P23-201ENST00000458635 123 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 MTCO1P31-201ENST00000506355 492 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 RNU1-41P-201ENST00000516161 162 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 Y_RNA.675-201ENST00000516389 149 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 RNU1-48P-201ENST00000516400 162 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC016925.2-201ENST00000605108 242 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 uc_338.14-201ENST00000613162 166 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC009233.1-201ENST00000616477 371 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 MTCO1P23-201ENST00000415223 1526 ntBASIC1.18□□□□□ -2.22
HIST1H1AQ02539 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.18□□□□□ -2.22
HIST1H1AQ02539 AC002543.1-201ENST00000299783 1954 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AL359854.1-201ENST00000614203 1594 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 CDC27P3-201ENST00000635418 1910 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AC110491.1-201ENST00000562191 2010 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
HIST1H1AQ02539 RNU1-62P-201ENST00000362599 164 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 RNA5SP27-201ENST00000363839 119 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 RNU6-884P-201ENST00000363889 107 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 RNU6-338P-201ENST00000383888 105 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 RNU6-140P-201ENST00000384566 108 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AL139098.1-201ENST00000407291 389 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 USP9YP6-201ENST00000413550 854 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.17□□□□□ -2.22
HIST1H1AQ02539 BX510359.4-201ENST00000423750 193 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AL513185.2-201ENST00000425543 193 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.17□□□□□ -2.22
HIST1H1AQ02539 HMGN2P3-201ENST00000433603 273 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 HMGN2P5-201ENST00000436882 273 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 FABP5P14-201ENST00000437273 393 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AC092393.1-201ENST00000439625 742 ntBASIC1.17□□□□□ -2.22
HIST1H1AQ02539 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.17□□□□□ -2.22
HIST1H1AQ02539 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms