Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP002453.2-201ENST00000533503 320 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.58□□□□□ -1.84
CTCFP49711 AL451064.1-201ENST00000607718 471 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AC008250.2-201ENST00000615261 205 ntBASIC3.58□□□□□ -1.84
CTCFP49711 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.58□□□□□ -1.84
CTCFP49711 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CTCFP49711 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.58□□□□□ -1.84
CTCFP49711 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CTCFP49711 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 MIR22-201ENST00000362190 85 ntBASIC3.57□□□□□ -1.84
CTCFP49711 RNU1-70P-201ENST00000362618 164 ntBASIC3.57□□□□□ -1.84
CTCFP49711 Y_RNA.40-201ENST00000362645 93 ntBASIC3.57□□□□□ -1.84
CTCFP49711 U8.3-201ENST00000363321 132 ntBASIC3.57□□□□□ -1.84
CTCFP49711 RNA5SP99-201ENST00000364020 114 ntBASIC3.57□□□□□ -1.84
CTCFP49711 RNY3P13-201ENST00000365542 102 ntBASIC3.57□□□□□ -1.84
CTCFP49711 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 RNU2-52P-201ENST00000410680 190 ntBASIC3.57□□□□□ -1.84
CTCFP49711 RN7SKP192-201ENST00000411291 327 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC126124.2-201ENST00000413542 321 ntBASIC3.57□□□□□ -1.84
CTCFP49711 RPL21P24-201ENST00000413752 448 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC006366.1-201ENST00000422002 759 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC012498.1-201ENST00000424037 437 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 AC087499.2-201ENST00000432861 149 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 AC016696.1-201ENST00000446949 318 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.57□□□□□ -1.84
CTCFP49711 MTND1P12-201ENST00000455231 147 ntBASIC3.57□□□□□ -1.84
CTCFP49711 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.57□□□□□ -1.84
CTCFP49711 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.57□□□□□ -1.84
CTCFP49711 snoU109.1-201ENST00000459339 135 ntBASIC3.57□□□□□ -1.84
CTCFP49711 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.57□□□□□ -1.84
CTCFP49711 RPS29P21-201ENST00000496272 170 ntBASIC3.57□□□□□ -1.84
CTCFP49711 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.57□□□□□ -1.84
CTCFP49711 AC079140.3-201ENST00000511111 550 ntBASIC3.57□□□□□ -1.84
CTCFP49711 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 SCGB1D5P-201ENST00000515134 247 ntBASIC3.57□□□□□ -1.84
CTCFP49711 Y_RNA.672-201ENST00000516289 104 ntBASIC3.57□□□□□ -1.84
CTCFP49711 MIR2276-201ENST00000516886 89 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.57□□□□□ -1.84
CTCFP49711 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.57□□□□□ -1.84
CTCFP49711 AP002963.1-201ENST00000530590 184 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 AC123904.3-201ENST00000547218 814 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC234778.2-201ENST00000566241 354 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC055876.1-202ENST00000567053 138 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.57□□□□□ -1.84
CTCFP49711 AC015871.2-201ENST00000603605 948 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AP000254.1-201ENST00000609934 520 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AP001506.1-201ENST00000615444 211 ntBASIC3.57□□□□□ -1.84
CTCFP49711 AC006111.3-201ENST00000622137 383 ntBASIC3.57□□□□□ -1.84
CTCFP49711 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CTCFP49711 AC091564.4-201ENST00000533934 2194 ntBASIC3.56□□□□□ -1.84
CTCFP49711 SDAD1P2-201ENST00000441308 2028 ntBASIC3.56□□□□□ -1.84
CTCFP49711 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.56□□□□□ -1.84
CTCFP49711 RNU4-24P-201ENST00000364565 139 ntBASIC3.56□□□□□ -1.84
CTCFP49711 MIR514A1-201ENST00000385133 98 ntBASIC3.56□□□□□ -1.84
CTCFP49711 MIR493-201ENST00000385254 89 ntBASIC3.56□□□□□ -1.84
CTCFP49711 SNORA3.2-201ENST00000408221 125 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.56□□□□□ -1.84
CTCFP49711 AC018630.2-202ENST00000422992 927 ntBASIC3.56□□□□□ -1.84
CTCFP49711 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.56□□□□□ -1.84
CTCFP49711 AC008850.1-201ENST00000427546 362 ntBASIC3.56□□□□□ -1.84
CTCFP49711 RPL23AP22-201ENST00000437556 453 ntBASIC3.56□□□□□ -1.84
CTCFP49711 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.56□□□□□ -1.84
CTCFP49711 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.56□□□□□ -1.84
CTCFP49711 AL049874.1-201ENST00000489560 388 ntBASIC3.56□□□□□ -1.84
CTCFP49711 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.56□□□□□ -1.84
CTCFP49711 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CTCFP49711 AL359273.1-201ENST00000510918 627 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC100870.1-201ENST00000522035 505 ntBASIC3.56□□□□□ -1.84
CTCFP49711 IGKV3-31-201ENST00000523109 329 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.56□□□□□ -1.84
CTCFP49711 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CTCFP49711 AC024909.2-201ENST00000553035 286 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AF038458.1-201ENST00000588406 262 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC040904.1-201ENST00000590850 223 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC008962.1-201ENST00000605729 304 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.56□□□□□ -1.84
CTCFP49711 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AC090132.2-201ENST00000615881 347 ntBASIC3.56□□□□□ -1.84
CTCFP49711 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.56□□□□□ -1.84
CTCFP49711 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
CTCFP49711 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CTCFP49711 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
CTCFP49711 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CTCFP49711 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CTCFP49711 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CTCFP49711 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CTCFP49711 RNU5E-1-201ENST00000362477 120 ntBASIC3.55□□□□□ -1.84
CTCFP49711 Y_RNA.318-201ENST00000365131 97 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms