Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MTCO3P9-201ENST00000506989 781 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC104806.1-201ENST00000508720 308 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
HOXA1P49639 AC025465.4-201ENST00000513422 638 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RN7SKP122-201ENST00000515923 296 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 SNORA70.16-201ENST00000516390 95 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 RNU6-1038P-201ENST00000516516 104 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 Y_RNA.689-201ENST00000516589 107 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXA1P49639 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 SYF2P1-201ENST00000550658 413 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 MIR4703-201ENST00000577728 79 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MIR3690-201ENST00000580266 75 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MIR3939-201ENST00000582614 106 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC005730.3-201ENST00000583067 366 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC008521.1-201ENST00000587471 187 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.6-201ENST00000603753 252 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.11-201ENST00000604059 253 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC008162.1-201ENST00000604718 254 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.1-201ENST00000604752 252 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.5-201ENST00000605253 252 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.12-201ENST00000605291 253 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.8-201ENST00000605353 252 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL670379.7-201ENST00000605823 252 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
HOXA1P49639 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.99□□□□□ -1.93
HOXA1P49639 FRG1KP-201ENST00000623592 341 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC009033.1-201ENST00000624279 431 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 MIR6830-201ENST00000636015 70 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 U6.114-201ENST00000636407 96 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC093010.3-201ENST00000570269 15214 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AL136164.4-201ENST00000625013 2135 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 AC073073.2-201ENST00000609827 2578 ntBASIC2.99□□□□□ -1.93
HOXA1P49639 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXA1P49639 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
HOXA1P49639 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXA1P49639 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 ACEA_U3.1-201ENST00000363057 217 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 SNORA72.1-201ENST00000363485 129 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 Y_RNA.160-201ENST00000363677 92 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 RPL21P3-201ENST00000395517 478 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 RPL32P23-201ENST00000397237 405 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AL139039.1-201ENST00000401900 692 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AC138393.2-201ENST00000414742 246 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA1P49639 AL139281.1-201ENST00000422120 335 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA1P49639 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA1P49639 AC104332.2-201ENST00000429959 156 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA1P49639 HMGN2P16-201ENST00000456802 261 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 VN1R17P-201ENST00000472048 1090 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 RN7SL132P-201ENST00000478131 296 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA1P49639 SNORA31.8-201ENST00000516327 108 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 RNU6-1256P-201ENST00000516539 103 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 RNA5SP471-201ENST00000516971 106 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXA1P49639 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXA1P49639 OR5BN1P-201ENST00000532955 829 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA1P49639 PARP1P2-201ENST00000556806 195 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA1P49639 AC012182.1-201ENST00000570133 895 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXA1P49639 BDH2P1-201ENST00000602288 736 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AL670379.4-201ENST00000605279 254 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
HOXA1P49639 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA1P49639 AC100810.6-201ENST00000638068 285 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXA1P49639 MTND4P35-201ENST00000604257 1375 ntBASIC2.98□□□□□ -1.93
HOXA1P49639 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.97□□□□□ -1.93
HOXA1P49639 MTND5P17-201ENST00000418405 1603 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA1P49639 SNORA70.2-201ENST00000364506 135 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RNU6-116P-201ENST00000384042 109 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 CISD1P1-201ENST00000393907 327 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 FGF7P8-201ENST00000402994 292 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXA1P49639 AC068533.1-201ENST00000418542 415 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RPL27AP8-201ENST00000424277 446 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 CALM2P2-201ENST00000428512 440 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RPL21P40-201ENST00000428586 483 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 RPL36AP53-201ENST00000432891 316 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXA1P49639 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXA1P49639 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA1P49639 HMGN1P18-201ENST00000457642 277 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 RPS20P20-201ENST00000460498 340 ntBASIC2.97□□□□□ -1.93
HOXA1P49639 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms