Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC099842.1-201ENST00000619919 596 ntBASIC3.45□□□□□ -1.86
HOXC9P31274 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC9P31274 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXC9P31274 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXC9P31274 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 AC116096.1-201ENST00000566804 2314 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 RNY3P13-201ENST00000365542 102 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 RNU6-328P-201ENST00000390887 106 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RNU6-278P-201ENST00000390945 109 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 ELOCP17-201ENST00000414751 326 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 MTCO3P41-201ENST00000414801 328 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 BX295541.1-201ENST00000417774 250 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 C1DP2-201ENST00000418167 426 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC9P31274 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXC9P31274 AC007283.2-201ENST00000424739 197 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC011816.1-201ENST00000441346 546 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 USP9YP15-201ENST00000442391 422 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC108059.3-201ENST00000456388 214 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RPS27P29-201ENST00000463110 252 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC108860.1-201ENST00000484521 383 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC010587.1-201ENST00000505809 469 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 HMGB3P15-201ENST00000507326 574 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 MTCO2P32-201ENST00000514865 403 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RN7SKP24-201ENST00000515888 284 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RN7SKP298-201ENST00000515950 94 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RNU6-405P-201ENST00000516637 110 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 RNU6-840P-201ENST00000517275 65 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 DEFB108A-201ENST00000530110 222 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXC9P31274 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXC9P31274 MIR3682-201ENST00000581338 84 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 KC877982.1-201ENST00000602313 470 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 AL589743.7-201ENST00000612637 233 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 AL355810.1-201ENST00000614629 552 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC006338.1-201ENST00000618453 749 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AL603758.1-201ENST00000618654 241 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 AC025034.2-201ENST00000623264 286 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC095031.1-201ENST00000623685 672 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.44□□□□□ -1.86
HOXC9P31274 DDX10P1-201ENST00000448545 1933 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 AC009812.4-201ENST00000569134 1805 ntBASIC3.44□□□□□ -1.86
HOXC9P31274 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC9P31274 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXC9P31274 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 RNU5E-1-201ENST00000362477 120 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 RNU6-754P-201ENST00000391166 107 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 RNU2-16P-201ENST00000410712 136 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC127391.1-201ENST00000411737 98 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXC9P31274 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC9P31274 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXC9P31274 MTATP6P4-201ENST00000427725 675 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 ARPC3P1-201ENST00000437218 533 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 ELOCP30-201ENST00000447108 299 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC9P31274 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 AC008481.1-201ENST00000463278 396 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC9P31274 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC9P31274 AC100870.1-201ENST00000522035 505 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXC9P31274 SYF2P1-201ENST00000550658 413 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 MED28P6-201ENST00000558776 231 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC9P31274 AF038458.1-201ENST00000588406 262 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXC9P31274 DUXAP4-201ENST00000603046 613 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC073648.5-201ENST00000603502 305 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC091805.2-201ENST00000603848 235 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC091304.9-201ENST00000612091 226 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 Z99129.1-201ENST00000612510 255 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AL133173.2-201ENST00000614270 90 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 CR381653.2-201ENST00000624041 768 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 PISRT1-201ENST00000626175 531 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC9P31274 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC9P31274 AC005832.2-201ENST00000538921 1430 ntBASIC3.43□□□□□ -1.86
HOXC9P31274 AC092326.2-201ENST00000624772 1561 ntBASIC3.42□□□□□ -1.86
HOXC9P31274 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms