Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD3P31249 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD3P31249 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXD3P31249 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 MIR448-201ENST00000362131 111 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 SNORA71.3-201ENST00000362582 128 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 RNU6-173P-201ENST00000364215 104 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
HOXD3P31249 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 XGY1-201ENST00000381172 446 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 Y_RNA.460-201ENST00000384255 102 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 RNU6-393P-201ENST00000384475 107 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 MIR514A1-201ENST00000385133 98 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXD3P31249 BTF3L4P3-201ENST00000418879 476 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 EIF4EP1-201ENST00000422311 642 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AL160275.3-201ENST00000423876 471 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD3P31249 VDAC1P3-201ENST00000434069 851 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC006517.1-201ENST00000480485 328 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD3P31249 RNU6-189P-201ENST00000516120 101 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 RNU7-143P-201ENST00000516781 65 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 RNA5SP471-201ENST00000516971 106 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 RANP9-201ENST00000519957 271 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD3P31249 AC022968.1-201ENST00000567372 442 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC106782.4-201ENST00000568264 210 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC012182.1-201ENST00000570133 895 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 MTND6P33-201ENST00000571794 183 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 POLR3GP2-201ENST00000588366 668 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 BDH2P1-201ENST00000602288 736 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AL592436.1-201ENST00000605135 558 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC006023.2-201ENST00000609916 167 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AL355810.1-201ENST00000614629 552 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 MIR7154-201ENST00000620673 73 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 AC039056.2-201ENST00000622261 511 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 MIR4275-201ENST00000636486 87 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXD3P31249 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
HOXD3P31249 AP001350.1-201ENST00000601906 1524 ntBASIC3.13□□□□□ -1.91
HOXD3P31249 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD3P31249 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
HOXD3P31249 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 UBE2L2-201ENST00000254302 429 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 MIR208A-201ENST00000362287 71 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 Y_RNA.333-201ENST00000365274 102 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 SNORA4.3-201ENST00000365564 137 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 RNU6-1181P-201ENST00000384191 106 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXD3P31249 AL356057.2-201ENST00000403318 432 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 YME1L1P1-201ENST00000429435 297 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD3P31249 HLA-N-201ENST00000437516 135 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD3P31249 PRDX3P3-201ENST00000447765 522 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD3P31249 RPL23AP31-201ENST00000456160 467 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 AC087884.1-201ENST00000469738 328 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 RN7SL585P-201ENST00000470538 280 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 RPS4XP13-201ENST00000483219 789 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 AC017037.1-201ENST00000508460 471 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD3P31249 SNORA19.2-201ENST00000516013 114 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 RNU2-69P-201ENST00000516061 100 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXD3P31249 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD3P31249 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXD3P31249 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXD3P31249 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD3P31249 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD3P31249 AC113139.1-201ENST00000605049 239 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXD3P31249 AC103705.1-201ENST00000619013 241 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 AL360181.4-201ENST00000621752 134 ntBASIC3.12□□□□□ -1.91
HOXD3P31249 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD3P31249 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD3P31249 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
HOXD3P31249 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HOXD3P31249 AC121333.1-201ENST00000567488 2709 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms