Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL031601.2-202ENST00000622650 282 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 MIR518A2-201ENST00000384966 87 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 AL035407.2-201ENST00000454090 378 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC0.83□□□□□ -2.28
COL6A3P12111 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.83□□□□□ -2.28
COL6A3P12111 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.83□□□□□ -2.28
COL6A3P12111 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
COL6A3P12111 MIR365A-201ENST00000362260 87 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 Y_RNA.514-201ENST00000384528 112 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 MIR524-201ENST00000385242 87 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
COL6A3P12111 RPL17P49-201ENST00000443728 411 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 EIF4A1P12-201ENST00000551910 141 ntBASIC0.83□□□□□ -2.28
COL6A3P12111 RNA5SP347-201ENST00000362445 119 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.82□□□□□ -2.28
COL6A3P12111 HSPE1P24-201ENST00000450782 238 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.82□□□□□ -2.28
COL6A3P12111 AC104997.1-201ENST00000519761 717 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 HAUS6P2-201ENST00000433254 2404 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 RNU6-1164P-201ENST00000364428 107 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 RNU2-70P-201ENST00000410718 179 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 RNU2-41P-201ENST00000410991 178 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.82□□□□□ -2.28
COL6A3P12111 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC0.82□□□□□ -2.28
COL6A3P12111 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.82□□□□□ -2.28
COL6A3P12111 AC068831.7-201ENST00000616954 363 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 AC099654.7-201ENST00000635788 2127 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 SNORD95.1-201ENST00000364099 68 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 AL353689.1-201ENST00000438895 199 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC0.82□□□□□ -2.28
COL6A3P12111 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.82□□□□□ -2.28
COL6A3P12111 MIR5194-201ENST00000582634 120 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 MIR4278-201ENST00000636094 69 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 AC112487.2-201ENST00000637950 304 ntBASIC0.82□□□□□ -2.28
COL6A3P12111 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC0.81□□□□□ -2.28
COL6A3P12111 AL500527.1-201ENST00000448532 255 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.81□□□□□ -2.28
COL6A3P12111 RPS27P21-201ENST00000486977 252 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 RN7SKP179-201ENST00000516126 217 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 Y_RNA.375-201ENST00000365625 101 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 RNU6-1181P-201ENST00000384191 106 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 TRAPPC2P10-201ENST00000415662 323 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 RPS20P20-201ENST00000460498 340 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 SNORA14.1-201ENST00000516113 141 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.81□□□□□ -2.28
COL6A3P12111 AP003327.1-201ENST00000529684 127 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 AC010620.1-201ENST00000601088 1102 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.81□□□□□ -2.28
COL6A3P12111 AC068787.1-201ENST00000623908 691 ntBASIC0.81□□□□□ -2.28
COL6A3P12111 AL157700.1-201ENST00000561973 1432 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 AL591704.2-201ENST00000421658 181 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 PABPC1P3-201ENST00000469174 459 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 AC007834.2-201ENST00000536310 343 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.8□□□□□ -2.28
COL6A3P12111 RNU6-989P-201ENST00000362756 107 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 RNA5SP98-201ENST00000363158 137 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 SNORA62.1-201ENST00000364287 154 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 AC068050.1-201ENST00000394891 380 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 BTF3P12-201ENST00000519620 469 ntBASIC0.8□□□□□ -2.28
COL6A3P12111 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC0.8□□□□□ -2.28
COL6A3P12111 RNU1-101P-201ENST00000391171 127 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.79□□□□□ -2.28
COL6A3P12111 RPL21P104-201ENST00000464143 478 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.79□□□□□ -2.28
COL6A3P12111 LSM6P2-201ENST00000552208 177 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 MIR378F-201ENST00000578143 78 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.79□□□□□ -2.28
COL6A3P12111 CYP2C61P-201ENST00000604072 290 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.79□□□□□ -2.28
COL6A3P12111 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.79□□□□□ -2.28
COL6A3P12111 AC091932.3-201ENST00000624223 323 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 Y_RNA.117-201ENST00000363294 101 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 RNY4P27-201ENST00000363341 96 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.79□□□□□ -2.28
COL6A3P12111 MIR4474-201ENST00000579189 78 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC0.79□□□□□ -2.28
COL6A3P12111 AL139344.1-201ENST00000605228 195 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 AL050343.2-201ENST00000607338 280 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC0.79□□□□□ -2.28
COL6A3P12111 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.79□□□□□ -2.28
COL6A3P12111 AC080100.1-201ENST00000624239 5356 ntBASIC0.79□□□□□ -2.28
COL6A3P12111 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.28
COL6A3P12111 RNU4-73P-201ENST00000363164 141 ntBASIC0.78□□□□□ -2.28
COL6A3P12111 MIR17-201ENST00000385012 84 ntBASIC0.78□□□□□ -2.28
COL6A3P12111 CCNB2P1-201ENST00000399411 1150 ntBASIC0.78□□□□□ -2.28
COL6A3P12111 RNU6-733P-201ENST00000410759 104 ntBASIC0.78□□□□□ -2.28
COL6A3P12111 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
COL6A3P12111 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms