Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 NUP35P1-201ENST00000422734 947 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 HMGN2P30-201ENST00000423237 256 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 SNRPEP9-201ENST00000436794 238 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AC021205.2-201ENST00000480069 347 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 AP003467.2-201ENST00000520175 319 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.72□□□□□ -1.81
NPHP1O15259 HMGN1P30-201ENST00000589286 268 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AC004852.3-201ENST00000614131 326 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.72□□□□□ -1.81
NPHP1O15259 MIR6715A-201ENST00000615929 79 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AC068880.5-201ENST00000624331 290 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AC097520.1-201ENST00000624435 385 ntBASIC3.72□□□□□ -1.81
NPHP1O15259 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.72□□□□□ -1.81
NPHP1O15259 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NPHP1O15259 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NPHP1O15259 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.72□□□□□ -1.81
NPHP1O15259 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.71□□□□□ -1.81
NPHP1O15259 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
NPHP1O15259 RNU4-82P-201ENST00000362443 140 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 U3.11-201ENST00000364476 212 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 MIR888-201ENST00000401186 77 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.71□□□□□ -1.82
NPHP1O15259 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.71□□□□□ -1.82
NPHP1O15259 SEPT2P1-201ENST00000419651 180 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC063976.3-201ENST00000426849 329 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.71□□□□□ -1.82
NPHP1O15259 TAF9P1-201ENST00000445421 515 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 EEF1B2P7-201ENST00000451177 676 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 TAF9P2-201ENST00000454958 515 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.71□□□□□ -1.82
NPHP1O15259 AC091179.1-201ENST00000461606 579 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC092185.1-201ENST00000491371 97 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.71□□□□□ -1.82
NPHP1O15259 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 AC007834.2-201ENST00000536310 343 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.6-201ENST00000603753 252 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.11-201ENST00000604059 253 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC008162.1-201ENST00000604718 254 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.1-201ENST00000604752 252 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.5-201ENST00000605253 252 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.12-201ENST00000605291 253 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.8-201ENST00000605353 252 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC004805.2-201ENST00000605382 482 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AL670379.7-201ENST00000605823 252 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC008147.4-201ENST00000617570 1204 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 AC002064.3-201ENST00000623448 346 ntBASIC3.71□□□□□ -1.82
NPHP1O15259 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.71□□□□□ -1.82
NPHP1O15259 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.71□□□□□ -1.82
NPHP1O15259 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NPHP1O15259 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.7□□□□□ -1.82
NPHP1O15259 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
NPHP1O15259 AL359693.1-201ENST00000614959 2407 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NPHP1O15259 UBE2L2-201ENST00000254302 429 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 AC062016.1-201ENST00000355719 319 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 SNORA26.8-201ENST00000391306 124 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 Y_RNA.598-201ENST00000410480 95 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 NPM1P11-201ENST00000417106 855 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.7□□□□□ -1.82
NPHP1O15259 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.7□□□□□ -1.82
NPHP1O15259 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.7□□□□□ -1.82
NPHP1O15259 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.7□□□□□ -1.82
NPHP1O15259 CECR9-201ENST00000453421 199 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 RNA5SP337-201ENST00000517007 109 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.7□□□□□ -1.82
NPHP1O15259 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
NPHP1O15259 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.7□□□□□ -1.82
NPHP1O15259 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.7□□□□□ -1.82
NPHP1O15259 AC079600.2-201ENST00000550076 130 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.7□□□□□ -1.82
NPHP1O15259 HMGN2P15-201ENST00000585707 270 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 AL358072.1-201ENST00000604156 575 ntBASIC3.7□□□□□ -1.82
NPHP1O15259 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.7□□□□□ -1.82
NPHP1O15259 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
NPHP1O15259 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
NPHP1O15259 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.69□□□□□ -1.82
NPHP1O15259 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.69□□□□□ -1.82
NPHP1O15259 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 RNA5SP383-201ENST00000362934 120 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 SNORA9.2-201ENST00000365361 133 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 RNU5E-6P-201ENST00000365574 115 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
NPHP1O15259 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
NPHP1O15259 RPL32P35-201ENST00000415214 394 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 AC104651.1-201ENST00000427559 735 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 HMGB1P27-201ENST00000431429 603 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 RPL23AP22-201ENST00000437556 453 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 HMGB3P12-201ENST00000438745 556 ntBASIC3.69□□□□□ -1.82
NPHP1O15259 RPL23AP58-201ENST00000440453 469 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms