Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORA3.3-201ENST00000408712 125 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MTCYBP8-201ENST00000422855 651 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC018630.2-202ENST00000422992 927 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC093106.2-201ENST00000428212 385 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MTND1P18-201ENST00000448191 573 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 HMGB3P8-201ENST00000449709 577 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 GMPSP1-201ENST00000514075 579 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 ERHP1-201ENST00000523006 310 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 YPEL5P3-201ENST00000547227 352 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MIR4703-201ENST00000577728 79 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MIR4424-201ENST00000585257 86 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AP001029.3-201ENST00000588063 596 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC067852.3-201ENST00000589177 561 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC130324.3-201ENST00000614165 542 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 SDR42E1P2-201ENST00000614861 481 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 AC010133.1-201ENST00000615809 842 ntBASIC3.65□□□□□ -1.83
VPS4AQ9UN37 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS4AQ9UN37 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNU6-179P-201ENST00000363350 107 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNU6-946P-201ENST00000383878 107 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 MIR199A2-201ENST00000385289 110 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNU6-903P-201ENST00000391270 109 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 NDUFS5P1-201ENST00000405668 289 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AL356776.1-201ENST00000406574 447 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNU2-29P-201ENST00000410423 189 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNU6-193P-201ENST00000410977 107 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AL118520.1-201ENST00000450770 291 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RPS20P20-201ENST00000460498 340 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC006512.1-201ENST00000468816 291 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 HSPE1P6-201ENST00000479457 291 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RPL32P34-201ENST00000486380 400 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 MTCO2P30-201ENST00000503662 364 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 Y_RNA.702-201ENST00000516843 96 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RN7SKP209-201ENST00000516888 304 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RN7SKP258-201ENST00000517151 304 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC005951.2-201ENST00000576282 495 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AL355810.1-201ENST00000614629 552 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC010338.1-201ENST00000621823 717 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC007998.5-201ENST00000622938 237 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC025034.2-201ENST00000623264 286 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC048347.1-201ENST00000624621 427 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AP001350.1-201ENST00000601906 1524 ntBASIC3.64□□□□□ -1.83
VPS4AQ9UN37 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS4AQ9UN37 AC092326.2-201ENST00000624772 1561 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AL354685.2-201ENST00000448218 1447 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 DEFB108F-201ENST00000344638 222 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 Y_RNA.157-201ENST00000363638 102 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 RNU6-1029P-201ENST00000384109 107 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 MIR514A2-201ENST00000385131 88 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 MIR514A3-201ENST00000385132 88 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 RNU6-373P-201ENST00000411247 98 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 RPL21P111-201ENST00000418453 477 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 HSPD1P21-201ENST00000436541 245 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 TXNP1-201ENST00000441872 371 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 CYCSP35-201ENST00000451978 304 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 RPS29P15-201ENST00000458329 171 ntBASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.63□□□□□ -1.83
VPS4AQ9UN37 AC004801.2-202ENST00000463559 283 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms