Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AL353705.1-201ENST00000433468 480 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 RPL23AP58-201ENST00000440453 469 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 RPS24P13-201ENST00000442520 397 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC115115.1-201ENST00000449927 248 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS28Q9UK41 ELOCP23-201ENST00000452014 332 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AL033528.1-201ENST00000453780 140 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 SUMO2P6-201ENST00000505273 288 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 SNORA74D-201ENST00000516404 141 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 RNU6-677P-201ENST00000516914 101 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC022634.1-201ENST00000520765 532 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC010653.1-201ENST00000571108 881 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 DUXAP4-201ENST00000603046 613 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AP002360.4-201ENST00000606980 481 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC073114.1-201ENST00000612027 490 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC091304.9-201ENST00000612091 226 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 AC018692.3-201ENST00000623929 123 ntBASIC3.25□□□□□ -1.89
VPS28Q9UK41 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS28Q9UK41 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS28Q9UK41 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS28Q9UK41 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC073343.1-201ENST00000328239 651 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 U3.4-201ENST00000363352 213 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC007899.1-201ENST00000412776 775 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 RPL26P27-201ENST00000414397 437 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC009518.2-201ENST00000418056 731 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC093106.2-201ENST00000428212 385 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 ST13P20-201ENST00000447996 1065 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 RPL39P36-201ENST00000490784 156 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC006445.1-201ENST00000491925 405 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC012414.6-201ENST00000568241 401 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC008739.2-201ENST00000597006 317 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 RPL23AP78-201ENST00000599928 470 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC131902.3-201ENST00000611767 581 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 DUSP12P1-201ENST00000612874 516 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AP001506.1-201ENST00000615444 211 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC002064.3-201ENST00000623448 346 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 MTND5P42-201ENST00000637720 498 ntBASIC3.24□□□□□ -1.89
VPS28Q9UK41 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS28Q9UK41 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS28Q9UK41 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS28Q9UK41 AC008264.2-201ENST00000610193 3731 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC093831.2-201ENST00000624393 3427 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 RNU6-288P-201ENST00000363690 104 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 RNY1P12-201ENST00000364251 105 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 NDUFS5P4-201ENST00000412983 318 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 HMGB1P9-201ENST00000429856 646 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 GTF2IP20-201ENST00000431663 360 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 RPS24P1-201ENST00000438550 371 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL671855.1-201ENST00000446875 1203 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 RPL37P4-201ENST00000448908 268 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 RN7SL283P-201ENST00000489055 303 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 RPS29P20-201ENST00000489592 171 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 RNU6-143P-201ENST00000516942 93 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 RNU2-46P-201ENST00000517038 113 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 HMGB1P41-201ENST00000520234 440 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS28Q9UK41 UBL5P2-201ENST00000583788 219 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC005771.1-201ENST00000585581 349 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC005498.1-201ENST00000592125 465 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 CLIC4P2-201ENST00000601934 717 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AC174048.1-201ENST00000603389 144 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 BNIP3P9-201ENST00000603714 553 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 AL355598.1-201ENST00000604169 202 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms