Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.54□□□□□ -2
TM9SF3Q9HD45 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
TM9SF3Q9HD45 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.54□□□□□ -2
TM9SF3Q9HD45 NACAP3-201ENST00000552100 481 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 AC135628.1-201ENST00000568867 534 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 AC245884.10-201ENST00000597355 337 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 AC080013.3-201ENST00000606839 578 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 AC016597.2-201ENST00000613256 341 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 SDR42E1P2-201ENST00000614861 481 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.54□□□□□ -2
TM9SF3Q9HD45 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
TM9SF3Q9HD45 OR4G3P-201ENST00000633500 913 ntBASIC2.54□□□□□ -2
TM9SF3Q9HD45 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.54□□□□□ -2
TM9SF3Q9HD45 ZNF658B-202ENST00000615961 3375 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 MIR518C-201ENST00000384822 101 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 CCNG1P1-201ENST00000406783 885 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL451054.2-201ENST00000420896 202 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 BX119904.4-201ENST00000424402 301 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 USP9YP11-201ENST00000427537 717 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 USP12PX-201ENST00000432383 1057 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 UBE2D3P1-201ENST00000436669 444 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC011816.1-201ENST00000441346 546 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 EEF1E1P1-201ENST00000446998 430 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 RPL21P134-201ENST00000453468 483 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 HMGB1P36-201ENST00000487709 576 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 HMGB3P3-201ENST00000510526 400 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC100870.1-201ENST00000522035 505 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL357094.1-201ENST00000603845 844 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AL139344.1-201ENST00000605228 195 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC006386.1-201ENST00000619436 415 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.53□□□□□ -2
TM9SF3Q9HD45 CU459211.1-201ENST00000635667 749 ntBASIC2.53□□□□□ -2
TM9SF3Q9HD45 RNU6-777P-201ENST00000364265 104 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 RNU1-39P-201ENST00000383897 165 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 RNU6-636P-201ENST00000384598 107 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AL590084.2-201ENST00000401481 382 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AL356421.1-201ENST00000403255 413 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 USP9YP20-201ENST00000419224 558 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 TIMM9P2-201ENST00000419324 266 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 RPS25P9-201ENST00000435591 252 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC073901.1-201ENST00000462471 408 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 RPS29P20-201ENST00000489592 171 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC135721.1-201ENST00000497954 479 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 GTF2IP9-201ENST00000502460 301 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC079395.1-201ENST00000510981 262 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 RNU6-415P-201ENST00000516252 97 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC007151.1-201ENST00000572774 483 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 OR4K7P-201ENST00000580232 945 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 TPMTP1-201ENST00000592307 737 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AP000403.1-201ENST00000603349 851 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC104763.2-201ENST00000604179 382 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC104237.2-201ENST00000612456 443 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 AC013470.4-201ENST00000619978 986 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 MIR7157-201ENST00000635801 60 ntBASIC2.52□□□□□ -2.01
TM9SF3Q9HD45 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 RNU6-289P-201ENST00000364093 107 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 Y_RNA.311-201ENST00000365068 96 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 RNU6-432P-201ENST00000384196 109 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 MIR1284-201ENST00000408337 120 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 RNU4-53P-201ENST00000410828 140 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 NDUFS5P4-201ENST00000412983 318 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 SSR1P2-201ENST00000415208 787 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC106883.1-201ENST00000418805 562 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 USP9YP24-201ENST00000434374 697 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 USP9YP17-201ENST00000444617 696 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 DUXAP8-207ENST00000456786 622 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC098591.2-201ENST00000510152 315 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 RNA5SP290-201ENST00000517133 127 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 CYCSP2-201ENST00000558168 301 ntBASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.51□□□□□ -2.01
TM9SF3Q9HD45 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms