Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MTND2P29-201ENST00000438595 412 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC006466.1-201ENST00000438721 289 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 RPL39P38-201ENST00000467018 153 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC140172.1-201ENST00000502928 141 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.680-201ENST00000516441 93 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 SNORA31.20-201ENST00000517111 133 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.719-201ENST00000517156 106 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 CBX3P8-201ENST00000532412 525 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 MIR3128-201ENST00000581957 66 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 FAM25E-202ENST00000608562 189 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AL136964.1-201ENST00000622038 2990 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AL445487.1-201ENST00000415694 1580 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 INTS6P1-201ENST00000504674 2530 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.214-201ENST00000364201 112 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RNU6-395P-201ENST00000365662 106 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.483-201ENST00000384380 101 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 MIR514A1-201ENST00000385133 98 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 MT-TW-201ENST00000387382 68 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RNU2-38P-201ENST00000410856 79 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 EI24P1-201ENST00000416584 867 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 HSPD1P21-201ENST00000436541 245 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RPS3AP46-201ENST00000448352 682 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RPS29P22-201ENST00000472363 168 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RPS20P22-201ENST00000473700 357 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RPL12P20-201ENST00000475538 479 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 SCARNA15.2-201ENST00000516409 127 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.687-201ENST00000516558 91 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RNU6-1315P-201ENST00000517187 99 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 MIR1273C-201ENST00000578669 77 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RN7SL52P-201ENST00000584271 284 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AC002545.1-201ENST00000592511 181 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AL121932.1-201ENST00000605542 214 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 AL355810.1-201ENST00000614629 552 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 RMST_4.1-201ENST00000616886 107 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 SNORD39.4-201ENST00000620099 78 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 FP236240.3-201ENST00000623061 327 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 ZNF72P-201ENST00000425869 1908 ntBASIC4.82□□□□□ -1.64
TRIM56Q9BRZ2 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.60-201ENST00000362831 98 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 RNA5SP123-201ENST00000363244 119 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.117-201ENST00000363294 101 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.222-201ENST00000364264 102 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.376-201ENST00000365638 108 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 RNA5SP87-201ENST00000384155 118 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.478-201ENST00000384358 107 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 SNORA51.11-201ENST00000384442 131 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.562-201ENST00000384695 113 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 RNU1-82P-201ENST00000390851 165 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 RNU6-325P-201ENST00000411132 105 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 MTCO3P19-201ENST00000415864 321 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 ELOCP20-201ENST00000422460 345 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AL451062.2-201ENST00000427515 271 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AL356867.1-201ENST00000429623 299 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 FCF1P4-201ENST00000448326 183 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 RAC1P9-201ENST00000604990 392 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC006023.2-201ENST00000609916 167 ntBASIC4.81□□□□□ -1.64
TRIM56Q9BRZ2 AC131238.1-201ENST00000617135 328 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms