Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 EEF1A1P41-201ENST00000414667 207 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 MRPL50P2-201ENST00000416821 482 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC009237.8-201ENST00000445492 379 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AL359385.1-201ENST00000456509 365 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC013267.1-201ENST00000458227 267 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC087588.1-201ENST00000462203 316 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 HMGN2P13-201ENST00000476476 274 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 NDUFB4P2-201ENST00000509515 391 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 SNORA31.3-201ENST00000516029 96 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RNU6-927P-201ENST00000516199 100 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 SNORA64.4-201ENST00000516632 81 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RNA5SP337-201ENST00000517007 109 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RN7SKP258-201ENST00000517151 304 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 RNU6-840P-201ENST00000517275 65 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 ATP5F1P5-201ENST00000526403 760 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 MIR4528-201ENST00000577763 90 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC092656.1-203ENST00000624134 423 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 AC022336.2-201ENST00000568966 2538 ntBASIC2.98□□□□□ -1.93
CCDC3Q9BQI4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RNU5E-1-201ENST00000362477 120 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RNU6-960P-201ENST00000364056 120 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RNU6-1119P-201ENST00000384349 108 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MIR493-201ENST00000385254 89 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 UBE2V1P2-201ENST00000397758 440 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MTND3P17-201ENST00000416968 344 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC244505.5-201ENST00000443639 207 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC091179.1-201ENST00000461606 579 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RPL7P5-201ENST00000471472 736 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RPL31P60-201ENST00000478450 367 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 KCTD9P5-201ENST00000504141 1170 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MTND4LP22-201ENST00000508209 276 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 RNU6-1282P-201ENST00000516735 96 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC022690.1-201ENST00000526681 550 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 TRAV37-201ENST00000553906 342 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC005951.2-201ENST00000576282 495 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.6-201ENST00000603753 252 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.11-201ENST00000604059 253 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC008162.1-201ENST00000604718 254 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.1-201ENST00000604752 252 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.5-201ENST00000605253 252 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.12-201ENST00000605291 253 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.8-201ENST00000605353 252 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL670379.7-201ENST00000605823 252 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC072046.2-201ENST00000618366 268 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AL136313.1-201ENST00000624804 202 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC068137.4-201ENST00000638485 296 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 MAPK10-322ENST00000641485 4530 ntBASIC2.97□□□□□ -1.93
CCDC3Q9BQI4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RNU5E-6P-201ENST00000365574 115 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RNU6-805P-201ENST00000365643 106 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 DEFB108C-201ENST00000400154 252 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AL663109.1-201ENST00000411498 844 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 HMGB3P23-201ENST00000414981 585 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 Z85995.1-201ENST00000415547 335 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 PIGFP2-201ENST00000421400 651 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 VN1R108P-201ENST00000431580 830 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC119618.1-201ENST00000434191 222 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RPL36AP6-201ENST00000435770 321 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 RPS24P1-201ENST00000438550 371 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 AC073614.1-201ENST00000438690 650 ntBASIC2.96□□□□□ -1.94
CCDC3Q9BQI4 HMGB3P12-201ENST00000438745 556 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms