Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC087045.1-201ENST00000605856 382 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
VPS13AQ96RL7 TRAPPC2P10-201ENST00000415662 323 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC008749.1-201ENST00000597650 306 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC084373.1-201ENST00000603311 235 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.6□□□□□ -2.31
VPS13AQ96RL7 MIR6718-201ENST00000616153 80 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 CISD1P1-201ENST00000393907 327 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 SNORA79B-201ENST00000410557 148 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC118469.1-201ENST00000442943 488 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC117454.1-201ENST00000491120 168 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC012557.2-201ENST00000605919 418 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 AC138915.1-201ENST00000565427 1685 ntBASIC0.6□□□□□ -2.31
VPS13AQ96RL7 SFR1P1-201ENST00000403720 688 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 RPS27P23-201ENST00000487608 251 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC091435.1-201ENST00000505442 584 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 IGLVI-20-201ENST00000519296 130 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC068831.7-201ENST00000616954 363 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 MIR6866-201ENST00000638146 69 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC010285.1-201ENST00000470580 392 ntBASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.59□□□□□ -2.31
VPS13AQ96RL7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.32
VPS13AQ96RL7 MIR17-201ENST00000385012 84 ntBASIC0.59□□□□□ -2.32
VPS13AQ96RL7 HSPE1P26-201ENST00000405341 275 ntBASIC0.59□□□□□ -2.32
VPS13AQ96RL7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
VPS13AQ96RL7 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC0.59□□□□□ -2.32
VPS13AQ96RL7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC0.59□□□□□ -2.32
VPS13AQ96RL7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC0.59□□□□□ -2.32
VPS13AQ96RL7 AL139344.1-201ENST00000605228 195 ntBASIC0.59□□□□□ -2.32
VPS13AQ96RL7 AP000654.2-201ENST00000605633 586 ntBASIC0.59□□□□□ -2.32
VPS13AQ96RL7 RPL37P6-202ENST00000464216 403 ntBASIC0.58□□□□□ -2.32
VPS13AQ96RL7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.58□□□□□ -2.32
VPS13AQ96RL7 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13AQ96RL7 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13AQ96RL7 AC023932.2-201ENST00000603176 175 ntBASIC0.58□□□□□ -2.32
VPS13AQ96RL7 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.58□□□□□ -2.32
VPS13AQ96RL7 KLF3P2-201ENST00000465138 268 ntBASIC0.58□□□□□ -2.32
VPS13AQ96RL7 HMGB3P17-201ENST00000504195 649 ntBASIC0.58□□□□□ -2.32
VPS13AQ96RL7 NDUFS5P6-201ENST00000529136 295 ntBASIC0.58□□□□□ -2.32
VPS13AQ96RL7 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 RPL17P49-201ENST00000443728 411 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 MTCO1P30-201ENST00000515244 580 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 MTCO3P24-201ENST00000572729 782 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AP003485.1-201ENST00000625093 753 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 RNU4-42P-201ENST00000364738 142 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC092447.6-201ENST00000414578 210 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AL035666.1-201ENST00000446195 348 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 CCNB1IP1P3-201ENST00000454702 829 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 RPL21P136-201ENST00000605378 396 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 SNORA63.3-201ENST00000362682 132 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 SNRPEP7-201ENST00000438350 220 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC009090.3-201ENST00000616553 565 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 AC109809.1-201ENST00000619665 545 ntBASIC0.57□□□□□ -2.32
VPS13AQ96RL7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 RNA5SP167-201ENST00000365461 116 ntBASIC0.56□□□□□ -2.32
VPS13AQ96RL7 PTENP1-201ENST00000447117 1215 ntBASIC0.56□□□□□ -2.32
VPS13AQ96RL7 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 Y_RNA.572-201ENST00000384757 98 ntBASIC0.56□□□□□ -2.32
VPS13AQ96RL7 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 AC109927.2-201ENST00000506416 303 ntBASIC0.56□□□□□ -2.32
VPS13AQ96RL7 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 AC007792.1-201ENST00000623023 402 ntBASIC0.56□□□□□ -2.32
VPS13AQ96RL7 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC0.56□□□□□ -2.32
VPS13AQ96RL7 FO393413.1-201ENST00000402892 195 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 RNU4-72P-201ENST00000410754 173 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC005741.1-201ENST00000511094 432 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC084033.1-201ENST00000550830 633 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC004943.3-201ENST00000624116 600 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 C1DP3-201ENST00000455013 423 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 HMGN2P9-201ENST00000476875 229 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 TRBVB-201ENST00000477100 408 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.55□□□□□ -2.32
VPS13AQ96RL7 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
VPS13AQ96RL7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC0.55□□□□□ -2.32
VPS13AQ96RL7 Y_RNA.132-201ENST00000363421 102 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 RNY3-201ENST00000365484 102 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 RNU6-185P-201ENST00000384421 107 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.55□□□□□ -2.32
VPS13AQ96RL7 AC103851.1-201ENST00000506833 274 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms