Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 MIR3162-201ENST00000581818 82 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 AF131215.7-201ENST00000602443 707 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC013244.3-201ENST00000605614 388 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC103710.1-201ENST00000610003 901 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AL136313.1-201ENST00000624804 202 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS35Q96QK1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS35Q96QK1 Y_RNA.245-201ENST00000364493 95 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 RNU6-1200P-201ENST00000384162 107 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 RNU2-25P-201ENST00000411041 191 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 RPL22P18-201ENST00000417197 377 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 USP9YP13-201ENST00000417797 480 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 SUMO1P4-201ENST00000429430 302 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 MTND1P20-201ENST00000430341 950 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 RPS15AP5-201ENST00000436276 388 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 SNRPEP9-201ENST00000436794 238 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC011816.1-201ENST00000441346 546 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC108938.1-201ENST00000451204 136 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 RPL23AP41-201ENST00000484754 458 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS35Q96QK1 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC113155.1-201ENST00000511141 769 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 RNU6-415P-201ENST00000516252 97 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 DEFB108A-201ENST00000530110 222 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 GLYCAM1-201ENST00000546596 285 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL359212.1-201ENST00000556608 614 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC025281.1-201ENST00000567026 265 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 MIR4293-201ENST00000584305 78 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AL355472.4-201ENST00000610233 626 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC104237.2-201ENST00000612456 443 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC079395.3-201ENST00000615161 484 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 AC092608.2-201ENST00000624427 218 ntBASIC2.59□□□□□ -1.99
VPS35Q96QK1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS35Q96QK1 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS35Q96QK1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS35Q96QK1 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS35Q96QK1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS35Q96QK1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS35Q96QK1 ZNF271P-202ENST00000465539 1970 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 PABPC1P9-201ENST00000426076 1612 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AL391994.1-201ENST00000254724 282 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 RNU6-1180P-201ENST00000364935 107 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 MIR23A-201ENST00000385245 73 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 AL139039.1-201ENST00000401900 692 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.58□□□□□ -2
VPS35Q96QK1 RPS24P7-201ENST00000416921 246 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 ELOCP14-201ENST00000428070 331 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 MTND1P28-201ENST00000435623 950 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AL354941.1-201ENST00000438600 464 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 ELOCP7-201ENST00000439968 331 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.58□□□□□ -2
VPS35Q96QK1 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 RN7SL432P-201ENST00000484057 298 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 RPL37P25-201ENST00000507308 276 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.58□□□□□ -2
VPS35Q96QK1 RN7SKP258-201ENST00000517151 304 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.58□□□□□ -2
VPS35Q96QK1 AC243972.3-201ENST00000539655 198 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.58□□□□□ -2
VPS35Q96QK1 MIR4999-201ENST00000585029 91 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC025588.2-201ENST00000604851 466 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AC004805.2-201ENST00000605382 482 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 AL031667.3-201ENST00000620124 655 ntBASIC2.58□□□□□ -2
VPS35Q96QK1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
VPS35Q96QK1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
VPS35Q96QK1 RNU6-1167P-201ENST00000363227 94 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 RNU4-28P-201ENST00000364739 141 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.57□□□□□ -2
VPS35Q96QK1 MIR592-201ENST00000384959 97 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 MIR627-201ENST00000384979 97 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.57□□□□□ -2
VPS35Q96QK1 RNU2-49P-201ENST00000410666 184 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 FCF1P1-201ENST00000432690 571 ntBASIC2.57□□□□□ -2
VPS35Q96QK1 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.57□□□□□ -2
VPS35Q96QK1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.57□□□□□ -2
VPS35Q96QK1 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.57□□□□□ -2
VPS35Q96QK1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.57□□□□□ -2
VPS35Q96QK1 AC108059.3-201ENST00000456388 214 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms