Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
ERCC4Q92889 AC126177.8-201ENST00000618339 1015 ntBASIC4.37□□□□□ -1.71
ERCC4Q92889 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.37□□□□□ -1.71
ERCC4Q92889 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.37□□□□□ -1.71
ERCC4Q92889 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
ERCC4Q92889 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
ERCC4Q92889 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
ERCC4Q92889 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ERCC4Q92889 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ERCC4Q92889 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
ERCC4Q92889 RLIMP1-201ENST00000339626 1680 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
ERCC4Q92889 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
ERCC4Q92889 RNU6-1287P-201ENST00000362914 107 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 Y_RNA.326-201ENST00000365176 113 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 Y_RNA.339-201ENST00000365325 102 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 Y_RNA.387-201ENST00000383918 102 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 RNU6-1060P-201ENST00000384664 107 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 PTMAP5-201ENST00000393073 333 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AF228730.4-201ENST00000421457 183 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 CALM2P2-201ENST00000428512 440 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC004975.1-201ENST00000428733 208 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 ARF4P2-201ENST00000430209 526 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.36□□□□□ -1.71
ERCC4Q92889 CYCSP43-201ENST00000438233 310 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.36□□□□□ -1.71
ERCC4Q92889 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.36□□□□□ -1.71
ERCC4Q92889 RNU6-1038P-201ENST00000516516 104 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.36□□□□□ -1.71
ERCC4Q92889 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.36□□□□□ -1.71
ERCC4Q92889 AP006587.4-201ENST00000526053 529 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC093012.1-202ENST00000549403 582 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 BNIP3P5-201ENST00000562290 498 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.36□□□□□ -1.71
ERCC4Q92889 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.36□□□□□ -1.71
ERCC4Q92889 POLR3GP2-201ENST00000588366 668 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AC006116.10-201ENST00000591836 581 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 AL592436.1-201ENST00000605135 558 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 MIR4275-201ENST00000636486 87 ntBASIC4.36□□□□□ -1.71
ERCC4Q92889 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ERCC4Q92889 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.36□□□□□ -1.71
ERCC4Q92889 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
ERCC4Q92889 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
ERCC4Q92889 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
ERCC4Q92889 OTUD4P1-201ENST00000237841 3067 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
ERCC4Q92889 SNORA63-201ENST00000363450 132 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 RNU6-1127P-201ENST00000384580 107 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 RPL30P2-201ENST00000414021 291 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.35□□□□□ -1.71
ERCC4Q92889 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.35□□□□□ -1.71
ERCC4Q92889 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.35□□□□□ -1.71
ERCC4Q92889 SNORD19B-201ENST00000459623 84 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AP000873.1-201ENST00000463987 400 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 RPL21P8-201ENST00000465083 535 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ERCC4Q92889 RPL21P93-201ENST00000480465 489 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC083904.1-201ENST00000487828 231 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC078817.1-201ENST00000492623 435 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 RBBP4P6-201ENST00000508098 202 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.35□□□□□ -1.71
ERCC4Q92889 SNORA31.22-201ENST00000517204 135 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.35□□□□□ -1.71
ERCC4Q92889 AC025884.1-201ENST00000556034 378 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 MIR3942-201ENST00000585264 109 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AF038458.1-201ENST00000588406 262 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC067852.3-201ENST00000589177 561 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC174048.1-201ENST00000603389 144 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 MIR6867-201ENST00000610636 67 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 AC012409.4-201ENST00000612923 249 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.35□□□□□ -1.71
ERCC4Q92889 U6.98-201ENST00000637157 84 ntBASIC4.35□□□□□ -1.71
ERCC4Q92889 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
ERCC4Q92889 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
ERCC4Q92889 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.34□□□□□ -1.71
ERCC4Q92889 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
ERCC4Q92889 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
ERCC4Q92889 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
ERCC4Q92889 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
ERCC4Q92889 Y_RNA.384-201ENST00000383909 102 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 RNU6-701P-201ENST00000384059 107 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 RNU6-14P-201ENST00000384630 106 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 RNU6-882P-201ENST00000391025 103 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 NDUFS5P1-201ENST00000405668 289 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.34□□□□□ -1.71
ERCC4Q92889 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.34□□□□□ -1.71
ERCC4Q92889 AC244098.2-201ENST00000422068 99 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 AL691449.1-201ENST00000426570 421 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 HMGB3P11-201ENST00000440127 604 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 NUTF2P7-201ENST00000453086 375 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.34□□□□□ -1.71
ERCC4Q92889 RN7SL330P-201ENST00000469709 307 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.34□□□□□ -1.71
ERCC4Q92889 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms