Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AC007685.1-201ENST00000329806 452 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-960P-201ENST00000364056 120 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 RPL31P2-201ENST00000413849 377 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 RPS20P1-201ENST00000434853 354 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AC005019.1-201ENST00000436455 431 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 TXNP1-201ENST00000441872 371 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 RPL30P15-201ENST00000457129 321 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AL135752.1-201ENST00000479477 471 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AC104806.1-201ENST00000508720 308 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AC017037.2-201ENST00000513850 890 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-64P-201ENST00000517119 105 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USHBP1Q8N6Y0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 SAGE4P-201ENST00000442271 3381 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RNA5SP267-201ENST00000364893 126 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-61P-201ENST00000365528 109 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 SNORA24.1-201ENST00000384401 135 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-331P-201ENST00000384724 107 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 EIF4E2P1-201ENST00000393781 255 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 CISD1P1-201ENST00000393907 327 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL139397.2-201ENST00000404529 772 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RN7SKP177-201ENST00000410567 355 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RNA5SP107-201ENST00000411358 122 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-516P-201ENST00000411381 104 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 POLHP1-201ENST00000411806 470 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RPL7P46-201ENST00000425129 740 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RPL35AP22-201ENST00000436855 335 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC115115.1-201ENST00000449927 248 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RPL7P43-201ENST00000478876 753 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 PTP4A1P4-201ENST00000512479 322 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 MIR4503-201ENST00000582187 83 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 MIR5195-201ENST00000583555 115 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AF038458.1-201ENST00000588406 262 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 7SK.7-201ENST00000603504 247 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC007566.2-201ENST00000603642 413 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC092747.3-201ENST00000603769 301 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL670379.11-201ENST00000604059 253 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL670379.10-201ENST00000604330 253 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL670379.12-201ENST00000605291 253 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL670379.9-201ENST00000605428 253 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL157817.1-201ENST00000614264 790 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 MIR3651-201ENST00000630427 90 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL596275.2-204ENST00000641628 552 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AL596275.2-206ENST00000641957 626 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC007529.1-201ENST00000418574 2178 ntBASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USHBP1Q8N6Y0 AC032011.1-201ENST00000611703 1549 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC011266.1-201ENST00000624119 3569 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AL365440.1-201ENST00000436135 2167 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 MTND5P19-201ENST00000424872 1794 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 Y_RNA.576-201ENST00000384781 102 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AL121834.1-202ENST00000404494 277 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 RNU4-46P-201ENST00000410818 138 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 CYCSP10-201ENST00000417973 294 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 RPL31P12-201ENST00000422587 358 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 CYCSP4-201ENST00000429682 331 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 SNRPEP4-201ENST00000435815 279 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC025518.1-201ENST00000479856 347 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC016065.2-201ENST00000514530 444 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 RNU6-1137P-201ENST00000517073 99 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 COX6CP5-201ENST00000527162 228 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 OR11H5P-201ENST00000554039 926 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 AC004817.2-201ENST00000561794 651 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 MIR5583-1-201ENST00000580941 59 ntBASIC4.87□□□□□ -1.63
USHBP1Q8N6Y0 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms