Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
USP54Q70EL1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
USP54Q70EL1 OR1L1-202ENST00000373686 1083 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RNU6-198P-201ENST00000384258 104 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RNU6-891P-201ENST00000384280 111 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RNU6-997P-201ENST00000384725 107 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RN7SKP51-201ENST00000410781 304 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 RPL7L1P10-201ENST00000427790 463 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.58□□□□□ -2.16
USP54Q70EL1 MTND1P18-201ENST00000448191 573 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RPS15AP27-201ENST00000449183 343 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC005297.2-201ENST00000450430 606 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 BX248409.1-201ENST00000455497 255 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
USP54Q70EL1 AC114322.1-201ENST00000506771 926 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 BTF3P12-201ENST00000519620 469 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC074029.2-201ENST00000551045 634 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 MIR3616-201ENST00000584070 92 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC005498.1-201ENST00000592125 465 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC016727.2-201ENST00000603988 621 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC004775.1-201ENST00000607389 753 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC013468.1-201ENST00000608680 598 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC090116.1-201ENST00000615679 446 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 MIR7974-201ENST00000615835 79 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
USP54Q70EL1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
USP54Q70EL1 RNU4-91P-201ENST00000364778 135 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 RNU4-72P-201ENST00000410754 173 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.57□□□□□ -2.16
USP54Q70EL1 RPS3AP44-201ENST00000425466 790 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
USP54Q70EL1 AL589880.1-201ENST00000448271 287 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AL135752.1-201ENST00000479477 471 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 RN7SKP265-201ENST00000516448 223 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 RNU6-1282P-201ENST00000516735 96 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AC083923.1-201ENST00000523708 376 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 DUXAP5-201ENST00000529668 529 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.57□□□□□ -2.16
USP54Q70EL1 SETP7-201ENST00000552169 453 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.57□□□□□ -2.16
USP54Q70EL1 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC1.57□□□□□ -2.16
USP54Q70EL1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.57□□□□□ -2.16
USP54Q70EL1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.57□□□□□ -2.16
USP54Q70EL1 AC012254.4-201ENST00000588843 273 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AL391646.1-201ENST00000603860 190 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AC055876.5-201ENST00000605667 259 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AC126118.1-201ENST00000607744 628 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.57□□□□□ -2.16
USP54Q70EL1 AC005332.10-201ENST00000612725 619 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 AC020658.4-201ENST00000613987 684 ntBASIC1.57□□□□□ -2.16
USP54Q70EL1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
USP54Q70EL1 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
USP54Q70EL1 RNU4-41P-201ENST00000364426 143 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 RNU6-339P-201ENST00000384310 107 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 MIR767-201ENST00000390228 109 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 U3.29-201ENST00000391296 212 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
USP54Q70EL1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
USP54Q70EL1 AC004022.1-201ENST00000447766 1066 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 RPL21P134-201ENST00000453468 483 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 RPL30P12-201ENST00000474666 353 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 CYCSP26-201ENST00000534107 320 ntBASIC1.56□□□□□ -2.16
USP54Q70EL1 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
USP54Q70EL1 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USP54Q70EL1 Y_RNA.36-201ENST00000362602 112 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RNU6-441P-201ENST00000384545 106 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 MTND5P31-201ENST00000419366 1374 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RPL27AP8-201ENST00000424277 446 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC068135.1-201ENST00000446164 246 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
USP54Q70EL1 KATNBL1P4-201ENST00000503545 918 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC093767.1-201ENST00000504523 156 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RNU6-405P-201ENST00000516637 110 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RNU6-467P-201ENST00000517027 110 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC118942.1-201ENST00000529674 1035 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 OR8K4P-201ENST00000534608 872 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC025918.2-201ENST00000558683 763 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC1.55□□□□□ -2.16
USP54Q70EL1 AC074051.3-201ENST00000570238 358 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC090616.3-201ENST00000582184 217 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 MIR4658-201ENST00000584344 65 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC123912.5-201ENST00000605470 343 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC093838.1-201ENST00000613014 469 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AC079395.3-201ENST00000615161 484 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.55□□□□□ -2.16
USP54Q70EL1 TPTE2P4-201ENST00000258589 1605 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
USP54Q70EL1 RNU6-989P-201ENST00000362756 107 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RNU1-133P-201ENST00000364867 167 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 AL023807.1-201ENST00000407932 359 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 HMGN1P14-201ENST00000412459 517 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 RPS20P15-201ENST00000412792 311 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.55□□□□□ -2.16
USP54Q70EL1 MTCO1P48-201ENST00000448024 1096 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 MTND2P19-201ENST00000449129 1012 ntBASIC1.55□□□□□ -2.16
USP54Q70EL1 TRGVB-201ENST00000453257 471 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms