Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 MIR3653-201ENST00000625572 110 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 RNA5SP196-201ENST00000625967 102 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 NOL8P1-201ENST00000508336 3529 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC087190.4-201ENST00000574616 8334 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC005183.1-201ENST00000603687 1979 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
USP53Q70EK8 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
USP53Q70EK8 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
USP53Q70EK8 RNU1-132P-201ENST00000364300 164 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 RNA5SP366-201ENST00000365454 123 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 RNU6-1040P-201ENST00000383974 107 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AL022722.2-201ENST00000402519 180 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
USP53Q70EK8 RN7SKP202-201ENST00000410439 330 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC009237.10-201ENST00000414112 510 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AL356867.1-201ENST00000429623 299 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 GPM6BP2-201ENST00000432046 144 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AL645568.3-201ENST00000433683 316 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 OR4C10P-201ENST00000434991 931 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 GPM6BP1-201ENST00000446387 144 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AC078918.1-201ENST00000498515 228 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AC092436.3-201ENST00000511788 257 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.28□□□□□ -1.72
USP53Q70EK8 RNU6-976P-201ENST00000516086 111 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AP003730.1-201ENST00000524605 285 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AP003122.3-201ENST00000526316 255 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 ATP5F1P5-201ENST00000526403 760 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC084851.1-201ENST00000529105 249 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AC004024.1-201ENST00000549244 247 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 RPL7P50-201ENST00000600588 727 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC113403.1-201ENST00000604910 193 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AL591034.3-201ENST00000605511 685 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AP002826.1-201ENST00000608835 315 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC090132.2-201ENST00000615881 347 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 RMST_4.1-201ENST00000616886 107 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 PISRT1.1-201ENST00000616930 107 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 uc_338.13-201ENST00000618243 179 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 AC140113.4-201ENST00000622087 222 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.28□□□□□ -1.72
USP53Q70EK8 AC068254.2-201ENST00000623938 3577 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 AC116096.1-201ENST00000566804 2314 ntBASIC4.28□□□□□ -1.72
USP53Q70EK8 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP53Q70EK8 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.28□□□□□ -1.72
USP53Q70EK8 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
USP53Q70EK8 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
USP53Q70EK8 SPRR2C-201ENST00000290702 219 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 RNU6-1115P-201ENST00000362490 106 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 Y_RNA.28-201ENST00000362554 111 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 Y_RNA.145-201ENST00000363527 102 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 RNU6-395P-201ENST00000365662 106 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 SNORA75B-201ENST00000384053 137 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 MIR554-201ENST00000384874 96 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 MIR670-201ENST00000390142 98 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 MIR708-201ENST00000390708 88 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 Y_RNA.594-201ENST00000410373 140 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 RNU6-1050P-201ENST00000410388 107 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AL160275.2-201ENST00000412010 394 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 CYP4F29P-201ENST00000420685 446 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 RPL27AP8-201ENST00000424277 446 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AL132765.1-201ENST00000434165 553 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP53Q70EK8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.27□□□□□ -1.73
USP53Q70EK8 FABP5P15-201ENST00000453566 214 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.27□□□□□ -1.73
USP53Q70EK8 AP000926.1-201ENST00000479573 241 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AC108022.1-201ENST00000493466 478 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.27□□□□□ -1.73
USP53Q70EK8 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.27□□□□□ -1.73
USP53Q70EK8 RNA5SP497-201ENST00000516081 97 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 Y_RNA.670-201ENST00000516255 105 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AC063950.1-201ENST00000552036 308 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 BPIFA4P-203ENST00000603168 689 ntBASIC4.27□□□□□ -1.73
USP53Q70EK8 AC009229.3-201ENST00000608056 282 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms