Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GLUD1P4-201ENST00000590914 418 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AL035413.2-201ENST00000604801 525 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC009994.1-201ENST00000606889 253 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AC103710.2-201ENST00000609912 942 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
VPS53Q5VIR6 AL353746.1-201ENST00000566293 6881 ntBASIC4.08□□□□□ -1.76
VPS53Q5VIR6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 SNORA69-201ENST00000383895 132 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNU6-606P-201ENST00000384721 111 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 MIR1-2-201ENST00000384961 85 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNU6-278P-201ENST00000390945 109 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNU6-882P-201ENST00000391025 103 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RN7SKP111-201ENST00000410349 271 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNA5SP31-201ENST00000411144 127 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 MTND4P28-201ENST00000426217 387 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RPL23AP82-202ENST00000427528 469 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC097713.2-201ENST00000430199 356 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 BX679664.1-201ENST00000434429 253 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 DDX3P2-201ENST00000446138 111 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AL356010.1-201ENST00000456364 102 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 CENPBD1P1-201ENST00000464061 469 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC091951.2-201ENST00000500762 203 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNU6-507P-201ENST00000516045 100 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 SNORD27.1-201ENST00000516319 72 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RNU6-875P-201ENST00000516488 106 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AL133153.1-201ENST00000557756 303 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC069200.1-201ENST00000609511 323 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC012314.7-201ENST00000619693 93 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AC024614.3-201ENST00000637860 256 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 AP001148.1-201ENST00000624124 2359 ntBASIC4.07□□□□□ -1.76
VPS53Q5VIR6 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS53Q5VIR6 RIOK3P1-201ENST00000418778 1528 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL049781.1-201ENST00000623195 3585 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL354685.2-201ENST00000448218 1447 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 HSPE1P11-201ENST00000339579 310 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RNU1-33P-201ENST00000364249 162 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.279-201ENST00000364763 95 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RNU6-1009P-201ENST00000390996 107 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL136372.1-201ENST00000403060 228 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RNU2-9P-201ENST00000410194 145 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RNU2-43P-201ENST00000410306 190 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RPL35AP22-201ENST00000436855 335 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 BNIP3P2-201ENST00000441221 577 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC234775.1-201ENST00000454247 670 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 MTND1P11-201ENST00000456661 876 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RPL23AP67-201ENST00000465341 474 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RPL21P13-201ENST00000488305 481 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 HSPD1P15-201ENST00000505573 1122 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RNU6-798P-201ENST00000516912 103 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC107934.2-201ENST00000518653 310 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 IGKV2-23-201ENST00000518729 323 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 CENPUP1-201ENST00000526649 1202 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 OR5BN1P-201ENST00000532955 829 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 HIF1AP1-201ENST00000553642 175 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 RPL21P12-201ENST00000559810 515 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AP001429.1-201ENST00000602568 530 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC012443.1-201ENST00000605605 231 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 DISC2.1-201ENST00000612827 205 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 Y_RNA.804-201ENST00000615262 101 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AL355365.1-201ENST00000616480 294 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 MIR7975-201ENST00000619350 68 ntBASIC4.06□□□□□ -1.76
VPS53Q5VIR6 AC006504.8-201ENST00000621046 635 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms