Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARL4AP2-201ENST00000507378 601 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC109445.1-201ENST00000512356 383 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 SCARNA15.1-201ENST00000516384 125 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL4A4P53420 SMARCE1P4-201ENST00000523647 241 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.47□□□□□ -2.01
COL4A4P53420 AK6P1-201ENST00000540219 478 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.47□□□□□ -2.01
COL4A4P53420 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.47□□□□□ -2.01
COL4A4P53420 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.47□□□□□ -2.01
COL4A4P53420 NIFKP8-201ENST00000560500 874 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC091489.2-201ENST00000566263 604 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.47□□□□□ -2.01
COL4A4P53420 MIR5007-201ENST00000583098 95 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC008752.3-201ENST00000588113 712 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 VN1R79P-201ENST00000593540 513 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.47□□□□□ -2.01
COL4A4P53420 AC004223.4-201ENST00000612426 332 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC090970.3-201ENST00000612566 866 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 AC027807.2-201ENST00000616099 408 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 RMST_5.1-201ENST00000618704 126 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
COL4A4P53420 AP005901.5-201ENST00000545779 1796 ntBASIC2.47□□□□□ -2.01
COL4A4P53420 EXOC5P1-201ENST00000510543 1969 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A4P53420 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A4P53420 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A4P53420 RN7SKP226-201ENST00000364912 300 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 Y_RNA.453-201ENST00000384223 109 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 MIR499A-201ENST00000384903 122 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 U8.13-201ENST00000390842 128 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 SPA17P1-201ENST00000416656 452 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 HMGB1P31-201ENST00000437242 427 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 AL118496.2-201ENST00000448300 230 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AL033528.1-201ENST00000453780 140 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.46□□□□□ -2.02
COL4A4P53420 Y_RNA.701-201ENST00000516812 110 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.46□□□□□ -2.02
COL4A4P53420 RAB11AP2-201ENST00000545905 639 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 AL138976.2-201ENST00000563989 694 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AC112220.3-201ENST00000605502 502 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AC006566.1-201ENST00000608943 513 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 PART1_1.1-201ENST00000611761 217 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.46□□□□□ -2.02
COL4A4P53420 AL157786.1-207ENST00000627771 695 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.46□□□□□ -2.02
COL4A4P53420 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A4P53420 MTCO1P23-201ENST00000415223 1526 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
COL4A4P53420 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL4A4P53420 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.46□□□□□ -2.02
COL4A4P53420 AL079343.1-201ENST00000572358 1771 ntBASIC2.46□□□□□ -2.02
COL4A4P53420 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.45□□□□□ -2.02
COL4A4P53420 RNU5A-6P-201ENST00000384136 116 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 EEF1A1P40-201ENST00000412883 573 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 RPL23AP39-201ENST00000415533 405 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.45□□□□□ -2.02
COL4A4P53420 AL138785.1-201ENST00000425821 331 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.45□□□□□ -2.02
COL4A4P53420 USP12PX-201ENST00000432383 1057 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC234064.1-201ENST00000436312 247 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC073614.1-201ENST00000438690 650 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.45□□□□□ -2.02
COL4A4P53420 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.45□□□□□ -2.02
COL4A4P53420 TPT1P14-201ENST00000448018 505 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.45□□□□□ -2.02
COL4A4P53420 TPT1P7-201ENST00000458300 517 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 MTND1P16-201ENST00000465177 898 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.45□□□□□ -2.02
COL4A4P53420 HMGN1P10-201ENST00000474557 553 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.45□□□□□ -2.02
COL4A4P53420 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
COL4A4P53420 SNORA31.13-201ENST00000516624 135 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC025281.1-201ENST00000567026 265 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC012065.4-201ENST00000602445 679 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC011472.4-201ENST00000615848 491 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AL158209.2-201ENST00000619266 216 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 AC138649.3-201ENST00000622154 254 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 RPL23AP61-201ENST00000623642 466 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
COL4A4P53420 AC024614.3-201ENST00000637860 256 ntBASIC2.45□□□□□ -2.02
COL4A4P53420 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 328 ms