Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU1-103P-201ENST00000516502 125 ntBASIC2.77□□□□□ -1.97
CDX1P47902 RNU6-1220P-201ENST00000517126 108 ntBASIC2.77□□□□□ -1.97
CDX1P47902 SNORA31.26-201ENST00000517250 137 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.77□□□□□ -1.97
CDX1P47902 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX1P47902 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX1P47902 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX1P47902 AC015871.2-201ENST00000603605 948 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AL355877.2-201ENST00000603670 358 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AC064872.1-201ENST00000604823 1072 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AL158032.1-201ENST00000605401 106 ntBASIC2.77□□□□□ -1.97
CDX1P47902 Z99571.1-201ENST00000636677 394 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AL392088.2-201ENST00000637607 285 ntBASIC2.77□□□□□ -1.97
CDX1P47902 LRRC77P-213ENST00000637727 880 ntBASIC2.77□□□□□ -1.97
CDX1P47902 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.77□□□□□ -1.97
CDX1P47902 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CDX1P47902 GABRG2-229ENST00000641017 3628 ntBASIC2.77□□□□□ -1.97
CDX1P47902 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.77□□□□□ -1.97
CDX1P47902 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
CDX1P47902 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX1P47902 AL353743.1-202ENST00000431724 1695 ntBASIC2.76□□□□□ -1.97
CDX1P47902 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
CDX1P47902 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX1P47902 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 RNU1-73P-201ENST00000383971 164 ntBASIC2.76□□□□□ -1.97
CDX1P47902 Y_RNA.553-201ENST00000384670 102 ntBASIC2.76□□□□□ -1.97
CDX1P47902 MIR301A-201ENST00000385261 86 ntBASIC2.76□□□□□ -1.97
CDX1P47902 SNORA26.7-201ENST00000391288 122 ntBASIC2.76□□□□□ -1.97
CDX1P47902 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.76□□□□□ -1.97
CDX1P47902 NDUFS5P4-201ENST00000412983 318 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC114491.1-201ENST00000416095 246 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC068533.1-201ENST00000418542 415 ntBASIC2.76□□□□□ -1.97
CDX1P47902 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.76□□□□□ -1.97
CDX1P47902 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.76□□□□□ -1.97
CDX1P47902 RPL31P35-201ENST00000431058 377 ntBASIC2.76□□□□□ -1.97
CDX1P47902 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX1P47902 AL360221.1-201ENST00000445989 335 ntBASIC2.76□□□□□ -1.97
CDX1P47902 Z83846.1-201ENST00000446798 265 ntBASIC2.76□□□□□ -1.97
CDX1P47902 RPL37P4-201ENST00000448908 268 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC139453.3-201ENST00000493276 369 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC093534.1-201ENST00000504977 132 ntBASIC2.76□□□□□ -1.97
CDX1P47902 ARL2BPP4-201ENST00000506854 471 ntBASIC2.76□□□□□ -1.97
CDX1P47902 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.76□□□□□ -1.97
CDX1P47902 RN7SKP282-201ENST00000516824 299 ntBASIC2.76□□□□□ -1.97
CDX1P47902 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.76□□□□□ -1.97
CDX1P47902 NACAP3-201ENST00000552100 481 ntBASIC2.76□□□□□ -1.97
CDX1P47902 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX1P47902 AC006362.1-201ENST00000567392 174 ntBASIC2.76□□□□□ -1.97
CDX1P47902 PIGPP4-201ENST00000584447 307 ntBASIC2.76□□□□□ -1.97
CDX1P47902 MIR3922-201ENST00000585192 84 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.76□□□□□ -1.97
CDX1P47902 AC005498.1-201ENST00000592125 465 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC008739.2-201ENST00000597006 317 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC245014.2-201ENST00000603689 287 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC246785.4-201ENST00000605374 287 ntBASIC2.76□□□□□ -1.97
CDX1P47902 RN7SKP299-201ENST00000606679 301 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC138932.5-201ENST00000617759 563 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC072046.2-201ENST00000618366 268 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC012314.7-201ENST00000619693 93 ntBASIC2.76□□□□□ -1.97
CDX1P47902 UCA1.1-201ENST00000620952 75 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC004777.1-201ENST00000624317 287 ntBASIC2.76□□□□□ -1.97
CDX1P47902 AC073476.4-201ENST00000628409 72 ntBASIC2.76□□□□□ -1.97
CDX1P47902 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX1P47902 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CDX1P47902 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CDX1P47902 MTND4P35-201ENST00000604257 1375 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC099654.7-201ENST00000635788 2127 ntBASIC2.75□□□□□ -1.97
CDX1P47902 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CDX1P47902 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CDX1P47902 MTCO1P12-201ENST00000414273 1543 ntBASIC2.75□□□□□ -1.97
CDX1P47902 SNORA63.1-201ENST00000362493 131 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.75□□□□□ -1.97
CDX1P47902 MIR183-201ENST00000384958 110 ntBASIC2.75□□□□□ -1.97
CDX1P47902 MIR34B-201ENST00000385076 84 ntBASIC2.75□□□□□ -1.97
CDX1P47902 U3.39-201ENST00000408569 239 ntBASIC2.75□□□□□ -1.97
CDX1P47902 RN7SKP111-201ENST00000410349 271 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC092809.3-201ENST00000415453 231 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.75□□□□□ -1.97
CDX1P47902 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.75□□□□□ -1.97
CDX1P47902 MTCO2P34-201ENST00000421994 607 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AL139281.1-201ENST00000422120 335 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC009414.1-201ENST00000427200 443 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.75□□□□□ -1.97
CDX1P47902 RPL21P2-201ENST00000440049 481 ntBASIC2.75□□□□□ -1.97
CDX1P47902 MTCO1P19-201ENST00000443487 500 ntBASIC2.75□□□□□ -1.97
CDX1P47902 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CDX1P47902 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.75□□□□□ -1.97
CDX1P47902 PRSS3P4-201ENST00000453323 162 ntBASIC2.75□□□□□ -1.97
CDX1P47902 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC2.75□□□□□ -1.97
CDX1P47902 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.75□□□□□ -1.97
CDX1P47902 AC105252.1-201ENST00000503089 286 ntBASIC2.75□□□□□ -1.97
CDX1P47902 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms