Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 RNU5F-6P-201ENST00000362979 116 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFRSF4P43489 Z99497.1-201ENST00000421282 135 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC109583.1-201ENST00000432156 268 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC020550.1-201ENST00000447385 163 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AL160314.1-201ENST00000490836 438 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC138853.1-201ENST00000503549 823 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 RAC1P5-201ENST00000512182 576 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 RNU6-64P-201ENST00000517119 105 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC100870.1-201ENST00000522035 505 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 U73023.1-201ENST00000603134 700 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AL136363.1-201ENST00000605349 337 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AL355472.4-201ENST00000610233 626 ntBASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFRSF4P43489 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
TNFRSF4P43489 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFRSF4P43489 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
TNFRSF4P43489 AC092435.3-201ENST00000565538 3654 ntBASIC2.78□□□□□ -1.97
TNFRSF4P43489 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AP003122.5-201ENST00000527668 3766 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
TNFRSF4P43489 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 Y_RNA.46-201ENST00000362695 102 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 RNA5SP68-201ENST00000363885 119 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 RNU6-217P-201ENST00000384164 104 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 SNORA26.8-201ENST00000391306 124 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL359634.1-202ENST00000404721 284 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC078974.1-201ENST00000411597 223 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 NPM1P11-201ENST00000417106 855 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC244035.1-201ENST00000430042 390 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL512286.1-201ENST00000439244 400 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 MTND2P4-201ENST00000445034 1004 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 EEF1B2P7-201ENST00000451177 676 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 RNU7-23P-201ENST00000459465 62 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AP002884.2-201ENST00000471647 395 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC233702.1-201ENST00000482905 502 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AF131216.2-201ENST00000512316 564 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC245166.1-201ENST00000521012 253 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL356432.3-201ENST00000568952 465 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL031775.1-201ENST00000607014 887 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
TNFRSF4P43489 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC068880.5-201ENST00000624331 290 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
TNFRSF4P43489 AC099654.7-201ENST00000635788 2127 ntBASIC2.77□□□□□ -1.97
TNFRSF4P43489 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 ASNSP3-201ENST00000451989 1306 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC008669.1-201ENST00000565823 2178 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 Y_RNA.97-201ENST00000363094 102 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNU6-809P-201ENST00000384461 107 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNU6-140P-201ENST00000384566 108 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 MTCYBP36-201ENST00000404146 440 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNA5SP293-201ENST00000410527 113 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 ATG3P1-201ENST00000419507 911 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL365338.1-201ENST00000422282 858 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL714022.1-201ENST00000439897 151 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL513328.1-201ENST00000446460 224 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 EPS15P1-201ENST00000448836 336 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 160.9 ms