Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.95□□□□□ -2.1
COL18A1P39060 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
COL18A1P39060 SNORA67.6-201ENST00000391093 99 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.95□□□□□ -2.1
COL18A1P39060 AC092393.1-201ENST00000439625 742 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.95□□□□□ -2.1
COL18A1P39060 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.95□□□□□ -2.1
COL18A1P39060 Z82190.1-201ENST00000454534 490 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.95□□□□□ -2.1
COL18A1P39060 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.95□□□□□ -2.1
COL18A1P39060 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 RNU1-92P-201ENST00000517017 135 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC1.95□□□□□ -2.1
COL18A1P39060 OR5AK1P-201ENST00000524837 922 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC093510.2-201ENST00000562820 896 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 MIR3921-201ENST00000577308 85 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC090330.1-201ENST00000588646 764 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC1.95□□□□□ -2.1
COL18A1P39060 AC011330.2-201ENST00000621680 635 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 MIR6767-201ENST00000637302 66 ntBASIC1.95□□□□□ -2.1
COL18A1P39060 AC087359.1-201ENST00000508335 1740 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL18A1P39060 HMGB1P5-201ENST00000255320 642 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 RNU6-1300P-201ENST00000391046 108 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 RNU6-1197P-201ENST00000391183 107 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL18A1P39060 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 HMGN2P19-201ENST00000425149 265 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 UBE2D3P3-201ENST00000426992 425 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AL512637.2-201ENST00000431287 1256 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 AC244505.5-201ENST00000443639 207 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AC023424.2-201ENST00000493479 777 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 MTCO2P9-201ENST00000503214 694 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 AC010460.2-201ENST00000509054 677 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AC008526.1-201ENST00000509149 338 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
COL18A1P39060 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.94□□□□□ -2.1
COL18A1P39060 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.94□□□□□ -2.1
COL18A1P39060 AL049779.4-201ENST00000604500 156 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 HSPE1P7-201ENST00000604681 321 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 AC097504.2-201ENST00000608088 454 ntBASIC1.94□□□□□ -2.1
COL18A1P39060 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.93□□□□□ -2.1
COL18A1P39060 AC103710.2-202ENST00000641454 2853 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 RNU6-1155P-201ENST00000363554 107 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RNU1-109P-201ENST00000383960 147 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RNU2-25P-201ENST00000411041 191 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 MTCYBP32-201ENST00000427945 1084 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RAC1P7-201ENST00000445367 377 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC017099.1-201ENST00000448261 1028 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 SUMO2P2-201ENST00000456482 255 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AL359385.1-201ENST00000456509 365 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC087272.1-201ENST00000523624 533 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 CYB5AP5-201ENST00000549779 389 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.93□□□□□ -2.1
COL18A1P39060 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.93□□□□□ -2.1
COL18A1P39060 AC015688.2-201ENST00000584523 262 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AP000238.1-201ENST00000608759 426 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 OR10AB1P-201ENST00000609613 938 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 PVT1_3.1-201ENST00000620853 95 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
COL18A1P39060 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 OR4G11P-202ENST00000642116 1414 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
COL18A1P39060 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
COL18A1P39060 SUGT1P1-201ENST00000379514 476 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RNU6-207P-201ENST00000384137 107 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RNA5SP252-201ENST00000391131 119 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 FO393413.1-201ENST00000402892 195 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.93□□□□□ -2.1
COL18A1P39060 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 VN1R10P-201ENST00000447106 875 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RPL12P25-201ENST00000455592 494 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC092757.1-201ENST00000467293 467 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 RPL31P60-201ENST00000478450 367 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 SEM1P1-201ENST00000506694 209 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
COL18A1P39060 SNORA48.10-201ENST00000516965 160 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.93□□□□□ -2.1
COL18A1P39060 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.93□□□□□ -2.1
COL18A1P39060 AC011260.1-201ENST00000578420 472 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC136443.5-201ENST00000603741 370 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC091946.2-201ENST00000606105 291 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AP005137.2-201ENST00000609238 400 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 AC027309.3-201ENST00000623419 351 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 MIR3199-2-201ENST00000636243 86 ntBASIC1.93□□□□□ -2.1
COL18A1P39060 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
COL18A1P39060 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL18A1P39060 TPTE2P4-201ENST00000258589 1605 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 RNU1-93P-201ENST00000364704 169 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 AL356131.1-201ENST00000405826 414 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 MIR1290-201ENST00000408735 78 ntBASIC1.92□□□□□ -2.1
COL18A1P39060 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms