Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC116337.2-201ENST00000477662 156 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT2P34897 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.41□□□□□ -2.02
SHMT2P34897 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT2P34897 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.41□□□□□ -2.02
SHMT2P34897 CDC42P4-201ENST00000510507 563 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AC008716.1-201ENST00000511084 513 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.41□□□□□ -2.02
SHMT2P34897 RN7SKP40-201ENST00000517211 242 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 RPL7P20-201ENST00000520308 745 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 MTND1P24-201ENST00000552175 861 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.41□□□□□ -2.02
SHMT2P34897 AC090888.1-201ENST00000561335 1141 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 MIR4760-201ENST00000585040 80 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AF038458.1-201ENST00000588406 262 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 U73023.1-201ENST00000603134 700 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AL136363.1-201ENST00000605349 337 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AC091965.4-201ENST00000607691 587 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AC004908.2-201ENST00000609090 574 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT2P34897 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 AC023510.2-201ENST00000622162 746 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 CTSLP2-204ENST00000629029 392 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 MTND1P37-201ENST00000636562 264 ntBASIC2.41□□□□□ -2.02
SHMT2P34897 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT2P34897 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
SHMT2P34897 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.41□□□□□ -2.02
SHMT2P34897 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SHMT2P34897 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
SHMT2P34897 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
SHMT2P34897 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
SHMT2P34897 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SHMT2P34897 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
SHMT2P34897 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
SHMT2P34897 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
SHMT2P34897 RNU6-1214P-201ENST00000363650 109 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 RNU6-217P-201ENST00000384164 104 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 MIR518C-201ENST00000384822 101 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 MIR627-201ENST00000384979 97 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AL359511.1-201ENST00000402970 211 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SHMT2P34897 AL365496.1-201ENST00000426885 215 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AC007919.1-201ENST00000429380 217 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.4□□□□□ -2.03
SHMT2P34897 AL354941.1-201ENST00000438600 464 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC055855.1-201ENST00000489563 579 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.4□□□□□ -2.03
SHMT2P34897 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT2P34897 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.4□□□□□ -2.03
SHMT2P34897 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC2.4□□□□□ -2.03
SHMT2P34897 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.4□□□□□ -2.03
SHMT2P34897 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.4□□□□□ -2.03
SHMT2P34897 AC007038.2-201ENST00000608095 740 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SHMT2P34897 AL031667.3-201ENST00000620124 655 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AC007490.1-201ENST00000624321 703 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 AC097655.1-201ENST00000635075 318 ntBASIC2.4□□□□□ -2.03
SHMT2P34897 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
SHMT2P34897 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SHMT2P34897 Z82209.1-201ENST00000422141 2135 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
SHMT2P34897 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
SHMT2P34897 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHMT2P34897 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SHMT2P34897 Y_RNA.18-201ENST00000362461 102 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHMT2P34897 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SHMT2P34897 HMGB1P11-201ENST00000413899 637 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.39□□□□□ -2.03
SHMT2P34897 XKRYP1-201ENST00000423438 492 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.39□□□□□ -2.03
SHMT2P34897 XKRYP2-201ENST00000432915 492 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AC005094.1-201ENST00000440420 368 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AL049734.2-201ENST00000441066 616 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 MTATP6P30-201ENST00000443540 664 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 RPL7P36-201ENST00000444633 681 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 DDX3P2-201ENST00000446138 111 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 RNU7-59P-201ENST00000459101 61 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.39□□□□□ -2.03
SHMT2P34897 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.39□□□□□ -2.03
SHMT2P34897 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.39□□□□□ -2.03
SHMT2P34897 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.39□□□□□ -2.03
SHMT2P34897 MTATP6P15-201ENST00000527233 835 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AP000889.1-201ENST00000530968 660 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.39□□□□□ -2.03
SHMT2P34897 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.39□□□□□ -2.03
SHMT2P34897 AC090888.2-201ENST00000559765 1144 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 AC002545.1-201ENST00000592511 181 ntBASIC2.39□□□□□ -2.03
SHMT2P34897 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.39□□□□□ -2.03
SHMT2P34897 AP000811.1-201ENST00000603803 651 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms