Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MTCO1P39-201ENST00000426148 480 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 AC079780.1-201ENST00000428259 207 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD4P09016 UBE2V1P13-201ENST00000436983 439 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXD4P09016 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXD4P09016 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 AC008885.1-201ENST00000514930 301 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 RNA5SP217-201ENST00000515959 91 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 Y_RNA.672-201ENST00000516289 104 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
HOXD4P09016 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXD4P09016 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXD4P09016 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD4P09016 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 SETP2-201ENST00000553886 926 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 OR4K8P-201ENST00000578842 1048 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 RPL12P50-201ENST00000603116 116 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AC006023.1-201ENST00000603944 259 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AC011451.2-201ENST00000604303 598 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AL161729.4-201ENST00000604650 476 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 AL033523.1-201ENST00000605153 153 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 RNU6-87P-201ENST00000607561 108 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 AC090617.7-201ENST00000623952 126 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 PISRT1-201ENST00000626175 531 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD4P09016 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXD4P09016 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXD4P09016 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
HOXD4P09016 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 MTND5P26-201ENST00000426018 1752 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 FARSBP1-201ENST00000435808 1778 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
HOXD4P09016 RNU6-851P-201ENST00000384565 107 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 SNORA46-201ENST00000384762 135 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC233728.2-201ENST00000425348 757 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 ISCA1P6-201ENST00000427740 390 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 OR4K11P-201ENST00000431829 904 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 USP9YP28-201ENST00000435142 589 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 SNRPEP4-201ENST00000435815 279 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 RAC1P7-201ENST00000445367 377 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 TPT1P14-201ENST00000448018 505 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 UQCRHP3-201ENST00000451503 251 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 GSTA11P-201ENST00000452866 669 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC004924.1-201ENST00000480160 781 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 RNU6-798P-201ENST00000516912 103 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AC107934.1-201ENST00000522215 217 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AC016957.1-201ENST00000534895 309 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXD4P09016 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 MIR3118-1-201ENST00000581787 76 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 AL031176.1-201ENST00000604554 466 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD4P09016 AC103710.1-201ENST00000610003 901 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 BX664608.1-201ENST00000610519 487 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 AC007998.5-201ENST00000622938 237 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AC091953.2-201ENST00000623979 160 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 AL159972.1-201ENST00000625150 448 ntBASIC2.8□□□□□ -1.96
HOXD4P09016 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD4P09016 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD4P09016 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
HOXD4P09016 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXD4P09016 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD4P09016 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD4P09016 RNU4-1-201ENST00000363925 141 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 RNU6-1078P-201ENST00000364522 103 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 RN7SKP226-201ENST00000364912 300 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
HOXD4P09016 RNU5A-6P-201ENST00000384136 116 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.79□□□□□ -1.96
HOXD4P09016 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 BX295541.1-201ENST00000417774 250 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD4P09016 RPS3AP44-201ENST00000425466 790 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 HIGD1AP11-201ENST00000438361 280 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 DNAJC19P4-201ENST00000440115 345 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AL121871.1-201ENST00000443413 436 ntBASIC2.79□□□□□ -1.96
HOXD4P09016 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms