Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TMEM167AP1-201ENST00000423409 219 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 MTCO1P20-201ENST00000425366 358 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AL451062.2-201ENST00000427515 271 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXN3O00409 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 RNU6-420P-201ENST00000458780 107 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 FCF1P3-201ENST00000496394 590 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 AC104806.1-201ENST00000508720 308 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 RNU6-927P-201ENST00000516199 100 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 SNORD27.1-201ENST00000516319 72 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.85□□□□□ -1.79
FOXN3O00409 MTND1P35-201ENST00000526739 508 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
FOXN3O00409 AC104383.1-201ENST00000530297 370 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 ADI1P3-201ENST00000549509 470 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AL157687.1-201ENST00000554853 619 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AC010591.1-201ENST00000603941 649 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 AL365204.3-201ENST00000612448 685 ntBASIC3.85□□□□□ -1.79
FOXN3O00409 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.85□□□□□ -1.79
FOXN3O00409 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.85□□□□□ -1.79
FOXN3O00409 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.84□□□□□ -1.79
FOXN3O00409 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
FOXN3O00409 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXN3O00409 AC118273.1-201ENST00000525324 3006 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 TNPO1P3-201ENST00000436471 2662 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 RNU6-1167P-201ENST00000363227 94 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 RNY4P14-201ENST00000363656 96 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 Y_RNA.402-201ENST00000383972 102 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 Y_RNA.576-201ENST00000384781 102 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 U3.39-201ENST00000408569 239 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 MTND3P23-201ENST00000431980 347 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 TAAR7P-201ENST00000436141 242 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 MTND1P18-201ENST00000448191 573 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 AC114781.4-201ENST00000513707 639 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 Y_RNA.702-201ENST00000516843 96 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 RNA5SP290-201ENST00000517133 127 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 RNA5SP291-201ENST00000517222 105 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.84□□□□□ -1.79
FOXN3O00409 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.84□□□□□ -1.79
FOXN3O00409 AC022893.3-201ENST00000607665 437 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC012409.4-201ENST00000612923 249 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC063943.3-201ENST00000615562 356 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC104985.2-201ENST00000620598 500 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
FOXN3O00409 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
FOXN3O00409 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
FOXN3O00409 AC068647.1-201ENST00000489539 2265 ntBASIC3.84□□□□□ -1.79
FOXN3O00409 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
FOXN3O00409 AC007823.1-201ENST00000569932 1566 ntBASIC3.84□□□□□ -1.8
FOXN3O00409 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.84□□□□□ -1.8
FOXN3O00409 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
FOXN3O00409 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
FOXN3O00409 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXN3O00409 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXN3O00409 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXN3O00409 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXN3O00409 RNU6-996P-201ENST00000365438 107 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RNU6-116P-201ENST00000384042 109 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RNU6-606P-201ENST00000384721 111 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 CISD1P1-201ENST00000393907 327 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 EI24P2-201ENST00000397776 1076 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AL139397.2-201ENST00000404529 772 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 FAT1P1-201ENST00000406588 507 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RHEBP3-201ENST00000411920 351 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RPS12P24-201ENST00000412619 387 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 Z85995.1-201ENST00000415547 335 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AC017079.2-201ENST00000416102 485 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXN3O00409 AC068533.1-201ENST00000418542 415 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AL139413.1-201ENST00000421309 217 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXN3O00409 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXN3O00409 AL592045.1-201ENST00000429867 352 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RPL36AP6-201ENST00000435770 321 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXN3O00409 DDX3P2-201ENST00000446138 111 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXN3O00409 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXN3O00409 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXN3O00409 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXN3O00409 CASP1P1-201ENST00000526345 212 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AC022690.1-201ENST00000526681 550 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 RANP3-201ENST00000530970 276 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXN3O00409 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXN3O00409 MIR1254-2-201ENST00000579553 63 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AC098826.3-201ENST00000603823 466 ntBASIC3.83□□□□□ -1.8
FOXN3O00409 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXN3O00409 SNORA50A-202ENST00000629536 136 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms