Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AL391261.3-201ENST00000557194 520 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 MIR4270-201ENST00000581799 70 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 MIR3914-2-201ENST00000637339 95 ntBASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC61Q9Y6R9 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC079741.1-201ENST00000321498 212 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 RNY4P29-201ENST00000410801 97 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 BX323845.1-201ENST00000432417 179 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC090774.1-201ENST00000435925 246 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 H3F3BP1-201ENST00000440551 403 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AL354714.3-201ENST00000447284 493 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC090804.1-201ENST00000448870 490 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC092991.1-201ENST00000477176 376 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 FTH1P24-201ENST00000503502 462 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 RNU6-377P-201ENST00000515965 102 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC002545.1-201ENST00000592511 181 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC008745.1-201ENST00000604064 271 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AP000346.3-201ENST00000622821 210 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 AC090617.7-201ENST00000623952 126 ntBASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC61Q9Y6R9 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 UBE2L2-201ENST00000254302 429 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 RN7SKP185-201ENST00000362813 326 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 SNORA72.2-201ENST00000365028 127 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 MIR135A2-201ENST00000384854 100 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 U3.22-201ENST00000391120 215 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AC092447.6-201ENST00000414578 210 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AL158823.1-201ENST00000418441 478 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AL391219.1-201ENST00000422570 483 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 RN7SL814P-201ENST00000487715 300 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 MIR3145-201ENST00000580727 82 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AC069294.1-201ENST00000608397 350 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 SDAD1P1-202ENST00000524156 2051 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 AC008555.8-201ENST00000623602 2168 ntBASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
CCDC61Q9Y6R9 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 AC016397.1-201ENST00000412463 242 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 IGHV5-78-201ENST00000450948 295 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 Y_RNA.651-201ENST00000459380 103 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 RN7SL319P-201ENST00000480656 221 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 MIR5695-201ENST00000579717 85 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 AC108081.1-201ENST00000604358 221 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 AL391358.1-201ENST00000605342 190 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 MIR7641-1-201ENST00000627518 61 ntBASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC61Q9Y6R9 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RN7SKP113-201ENST00000363891 295 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-1180P-201ENST00000364935 107 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-821P-201ENST00000390995 107 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-1025P-201ENST00000410629 104 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RNU6-1001P-201ENST00000411265 100 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC006461.1-201ENST00000412637 326 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 snoU13.29-201ENST00000459370 104 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 RPL23AP49-201ENST00000492925 468 ntBASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC7.01□□□□□ -1.29
CCDC61Q9Y6R9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms